当前解析结果
SmilChr08G001866| 统一新 Gene ID | SmilChr08G001866 |
|---|---|
| 名称 | SmilChr08G001866 |
| 描述 | uncharacterized SmilChr08G001866 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 16025190 - 16025735 / + |
| NCBI Gene ID | LOC130998125 |
|---|---|
| GeneID | 130998125 |
| locus_tag | - |
| NCBI Name | LOC130998125 |
| 原始查询 | SmilChr08G001866 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycine-rich protein [Source:NCBI gene (formerly Entrezgene);Acc:839598]; symbol=AT1G27090; hit=AT1G27090; species=arabidopsis; confidence=medium |
| 产物 | glycine-rich protein [Source:NCBI gene (formerly Entrezgene);Acc:839598]; symbol=AT1G27090; hit=AT1G27090; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G27090 (AT1G27090)glycine-rich protein [Source:NCBI gene (formerly Entrezgene);Acc:839598] identity=45.6; qcov=1.36; evalue=9.21e-41; confidence=medium |
| Rice | Os03g0688200 (OSJNBa0022C08.20)- identity=61; qcov=0.415; evalue=1.08e-14; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998125 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057779541.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057779541.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057779541.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779541.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779541.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:16025197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B135,B79,C16,C30 |
Chr8:16025205 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,C24,C56 |
Chr8:16025206 |
CG |
C |
1bp_deletion | frameshift_variant | 4 | B135,C16,C41,C55 |
Chr8:16025206 |
CG |
C |
1bp_deletion | CDS_variant | 4 | B135,C16,C41,C55 |
Chr8:16025229 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B74,B77,C19,C2,C40 |
Chr8:16025285 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:16025286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C29,D11,D2 |
Chr8:16025294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B53 |
Chr8:16025325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B53 |
Chr8:16025343 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B40 |
Chr8:16025377 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B104,B124,B20,C58 |
Chr8:16025403 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A19,B123,C20,C24,C37,C56 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。