当前解析结果
SmilChr08G001883| 统一新 Gene ID | SmilChr08G001883 |
|---|---|
| 名称 | SmilChr08G001883 |
| 描述 | uncharacterized SmilChr08G001883 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 16352943 - 16355408 / + |
| NCBI Gene ID | LOC131001432 |
|---|---|
| GeneID | 131001432 |
| locus_tag | - |
| NCBI Name | LOC131001432 |
| 原始查询 | SmilChr08G001883 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hematological/neurological-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830145]; symbol=AT4G39860; hit=AT4G39860; species=arabidopsis; confidence=high |
| 产物 | hematological/neurological-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830145]; symbol=AT4G39860; hit=AT4G39860; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G39860 (AT4G39860)hematological/neurological-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830145] identity=63.8; qcov=0.9; evalue=2.37e-129; confidence=high |
| Rice | Os02g0574600- identity=61.9; qcov=0.909; evalue=3.65e-129; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF13266 (DUF4057) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001432 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057783813.1 |
| 2 | Cell projection | 细胞突起 | 1.00000 | XP_057783813.1 |
| 3 | Spindle | Spindle | 0.40000 | XP_057783813.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057783813.1 |
| 5 | Cilium | 纤毛 | 0.20000 | XP_057783813.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:16353183 |
A |
AAG |
2bp_insertion | frameshift_variant | 9 | B105,B134,B4,B46,B82,C36,C38,C48,C55 |
Chr8:16353296 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,C31 |
Chr8:16354391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B64 |
Chr8:16354596 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr8:16354610 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:16354850 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B46,B82,C24,C48 |
Chr8:16355049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C76 |
Chr8:16355057 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783813.1PF13266
DUF4057 38-339 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783813.1 |
Pfam | PF13266 |
DUF4057 | Family | 38 | 339 | 6.2e-151 | 503.0 | Protein of unknown function (DUF4057) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。