Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001894`

染色体: Chr08 坐标: 16415926-16421052 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001894`
名称	SmilChr08G001894
描述	ubiquitin carboxyl-terminal hydrolase 3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	16415926 - 16421052 / `-`

ID 对照

NCBI Gene ID	`LOC131001426`
GeneID	`131001426`
locus_tag	`-`
NCBI Name	`LOC131001426`
原始查询	`SmilChr08G001894`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin carboxyl-terminal hydrolase 3
产物	ubiquitin carboxyl-terminal hydrolase 3
Arabidopsis	`AT4G39910` (UBP3) ubiquitin-specific protease 3 [Source:NCBI gene (formerly Entrezgene);Acc:830150] identity=84.3; qcov=1; evalue=0; confidence=high
Rice	`Os03g0190800` (OJ1217B09.20) - identity=82; qcov=0.99; evalue=4.8e-179; confidence=high
GO	GO:0004197 (cysteine-type endopeptidase activity); GO:0004843 (cysteine-type deubiquitinase activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0016579 (protein deubiquitination)
KEGG	-
Pfam	PF00443 (UCH); PF13423 (UCH_1)
InterPro	-
eggNOG	-
NR	GeneID:131001426

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783803.1`
2	Cytoplasm	细胞质	1.00000	`XP_057783803.1`
3	Cytosol	细胞质基质	0.60000	`XP_057783803.1`
4	Nucleoplasm	核质	0.20000	`XP_057783803.1`
5	Chromosome	染色体	0.00000	`XP_057783804.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:16416682`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783803.1

367 aa

184

367

UCH

UCH_1

PF00443 UCH 23-356 aa PF13423 UCH_1 24-325 aa

XP_057783804.1

298 aa

149

298

UCH

UCH_1

PF00443 UCH 4-287 aa PF13423 UCH_1 47-256 aa

XP_057783805.1

298 aa

149

298

UCH

UCH_1

PF00443 UCH 4-287 aa PF13423 UCH_1 47-256 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783803.1`	Pfam	`PF00443`	UCH	Family	23	356	3.8e-65	220.7	Ubiquitin carboxyl-terminal hydrolase
`XP_057783803.1`	Pfam	`PF13423`	UCH_1	Domain	24	325	2.8e-26	93.6	Ubiquitin carboxyl-terminal hydrolase
`XP_057783804.1`	Pfam	`PF00443`	UCH	Family	4	287	7e-48	164.2	Ubiquitin carboxyl-terminal hydrolase
`XP_057783804.1`	Pfam	`PF13423`	UCH_1	Domain	47	256	1.2e-17	65.3	Ubiquitin carboxyl-terminal hydrolase
`XP_057783805.1`	Pfam	`PF00443`	UCH	Family	4	287	7e-48	164.2	Ubiquitin carboxyl-terminal hydrolase
`XP_057783805.1`	Pfam	`PF13423`	UCH_1	Domain	47	256	1.2e-17	65.3	Ubiquitin carboxyl-terminal hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927820.1
AAATAGAATTAAGGAAGAATGGCGGTCTATTCCAACTATAGATAGTGAGGATGACGAGGACCGCTGATTAGGAGCGCTAATAGCAAAAATTGGAGTGCAGATAGTGGCTTTCCATTTTAATCACACTTTAATCTCTACTTTCTTCTCCCGATCTTCATCACAATTACCAGATATTCCACTTTTATTCTTCCTTTTTCCGCCTCCTCCAATCCATCTCTGAAACCCCTAGTTTTAATCTGTTTGCGCCATTTTTTCCGACC...

XM_057927822.1
CGTGAGCAGTTGATAGAATATTATTCCAACAACAAAAATCCTGCTGATGCTGAAGAAAATCTCCTGACATGCTTAGCAGACTTGTTTTTGCAGGTCAATTTCCTCTTGCTGTTTGATGGGGTTTGCGATGCTAATTGCTAGAATAAGCTCACAAAAGAAAAAAACTGGTGTTCTTGCTCCAAAGCGTTTCGTACAGCGACTGAAGAAACAAAATGAAATTTTTCGCAGTTATATGCACCAGGATGCCCATGAATTCTTGA...

CDS

3 records

下载 CDS FASTA

LOC131001426
ATGGGGGCGGCGGGGTCGAAGCTGGAGAAGGCATTAGGAGACCAATTTCCGGAAGGCGAGCGTTATTTCGGTCTCGAGAACTTCGGCAACACTTGCTACTGCAACAGCGTGCTTCAGGCTCTTTATTTTTGTGTTCCATTTCGTGAGCAGTTGATAGAATATTATTCCAACAACAAAAATCCTGCTGATGCTGAAGAAAATCTCCTGACATGCTTAGCAGACTTGTTTTTGCAGATAAGCTCACAAAAGAAAAAAACTGG...

LOC131001426
ATGGGGTTTGCGATGCTAATTGCTAGAATAAGCTCACAAAAGAAAAAAACTGGTGTTCTTGCTCCAAAGCGTTTCGTACAGCGACTGAAGAAACAAAATGAAATTTTTCGCAGTTATATGCACCAGGATGCCCATGAATTCTTGAACTATTTGCTAAACGAACTGGTTGACATACTGGAGAAAGAGGCTCGAGCTGCTAAGAGTCAAGAAATTTCCCCAAAAATTGCAAATGGGCCAACAACTATATCTTCAAATGGTCC...

Protein

3 records

下载 Protein FASTA

XP_057783803.1
MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLIEYYSNNKNPADAEENLLTCLADLFLQISSQKKKTGVLAPKRFVQRLKKQNEIFRSYMHQDAHEFLNYLLNELVDILEKEARAAKSQEISPKIANGPTTISSNGPLREPVVTWVHKNFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKRPPQILVIHLKRFKYIEQ...

XP_057783804.1
MGFAMLIARISSQKKKTGVLAPKRFVQRLKKQNEIFRSYMHQDAHEFLNYLLNELVDILEKEARAAKSQEISPKIANGPTTISSNGPLREPVVTWVHKNFQGILTNETRCLRCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKRPPQILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVEDADAEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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