Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001918`

染色体: Chr08 坐标: 16705200-16711983 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001918`
名称	SmilChr08G001918
描述	multisite-specific tRNA:(cytosine-C(5))-methyltransferase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	16705200 - 16711983 / `-`

ID 对照

NCBI Gene ID	`LOC131001458`
GeneID	`131001458`
locus_tag	`-`
NCBI Name	`LOC131001458`
原始查询	`SmilChr08G001918`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	multisite-specific tRNA:(cytosine-C(5))-methyltransferase-like
产物	multisite-specific tRNA:(cytosine-C(5))-methyltransferase-like
Arabidopsis	`AT2G22400` (AT2G22400) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816771] identity=58.1; qcov=0.909; evalue=0; confidence=high
Rice	`Os09g0471900` - identity=52.8; qcov=1.01; evalue=0; confidence=high
GO	GO:0001510 (RNA methylation); GO:0003723 (RNA binding); GO:0016428 (tRNA (cytidine-N5)-methyltransferase activity)
KEGG	-
Pfam	PF01189 (Methyltr_RsmB-F); PF25376 (Pre-PUA_NSUN2); PF25378 (PUA_NSUN2)
InterPro	-
eggNOG	-
NR	GeneID:131001458

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783832.1`
2	Nucleolus	核仁	0.20000	`XP_057783832.1`
3	Chromosome	染色体	0.00000	`XP_057783832.1`
4	Centromere	着丝粒	0.00000	`XP_057783832.1`
5	Chromatin	染色质	0.00000	`XP_057783832.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:16705513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:16705536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B17,B51,B84,C21
`Chr8:16705766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:16705979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B16,B82,C48
`Chr8:16706536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B27,C16,C40,C76
`Chr8:16706687`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr8:16706844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr8:16706914`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr8:16707069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B16,B82,C48
`Chr8:16707164`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B16,B82,C48
`Chr8:16708637`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr8:16708682`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783832.1

882 aa

441

882

Methyltr_RsmB-F

Pre-PUA_NSUN2

PUA_NSUN2

PF01189 Methyltr_RsmB-F 220-404 aa PF25376 Pre-PUA_NSUN2 644-747 aa PF25378 PUA_NSUN2 749-837 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783832.1`	Pfam	`PF01189`	Methyltr_RsmB-F	Domain	220	404	9.2e-36	124.1	16S rRNA methyltransferase RsmB/F
`XP_057783832.1`	Pfam	`PF25376`	Pre-PUA_NSUN2	Domain	644	747	2.5e-31	108.7	NSUN2 Pre-PUA domain
`XP_057783832.1`	Pfam	`PF25378`	PUA_NSUN2	Domain	749	837	1.1e-24	87.1	NSUN2 PUA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927849.1
AAAGTCCAATCCAGCAAAAAAAGGCCCAAAAGTTAACCCGCGTCTTCTTCCCCTAACGCCTAAAAATGAAGGCAGTTTTCACATTCAAAAGGAGCAGCTGCAGCAGCAGTTATACACTTGCAACTACTGAGCACAGAAAACAAGCAATCCAATTGAAAGAGAGAGAAACAGATAGAGAGAAAATGGGAGGAAGGGGAAGATCTCGCACTCAGAGAAAGCACTTCAGCCAGAACAGAGAGAACGTGTGGAAGCGCCCCAAA...

CDS

1 records

下载 CDS FASTA

LOC131001458
ATGAAGGCAGTTTTCACATTCAAAAGGAGCAGCTGCAGCAGCAGTTATACACTTGCAACTACTGAGCACAGAAAACAAGCAATCCAATTGAAAGAGAGAGAAACAGATAGAGAGAAAATGGGAGGAAGGGGAAGATCTCGCACTCAGAGAAAGCACTTCAGCCAGAACAGAGAGAACGTGTGGAAGCGCCCCAAATCCGACGGTTCTGCTATTGACACACCCGCCGACGCCAACAATGGCGGCAAAGTACATAAACATTG...

Protein

1 records

下载 Protein FASTA

XP_057783832.1
MKAVFTFKRSSCSSSYTLATTEHRKQAIQLKERETDREKMGGRGRSRTQRKHFSQNRENVWKRPKSDGSAIDTPADANNGGKVHKHWEPFETQNLAFDEYYKVQGIVSAEEWDTFIKYLRTPLPAAFRINSSSQFYKDILFRLENDFMKSLPAEDTDGNAVNAIEVLPWYPDHLAWQSYYSRNQLRKNQALEQFHEFLKLENEIGNITRQEAVSMVPPLFLDVRPDHFVLDMCAAPGSKTFQLLEMIYKLTEPGTLPTGM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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