当前解析结果
SmilChr08G001923| 统一新 Gene ID | SmilChr08G001923 |
|---|---|
| 名称 | SmilChr08G001923 |
| 描述 | 14-3-3-like protein 16R |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 16761778 - 16764157 / + |
| NCBI Gene ID | LOC131001462 |
|---|---|
| GeneID | 131001462 |
| locus_tag | - |
| NCBI Name | LOC131001462 |
| 原始查询 | SmilChr08G001923 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 14-3-3-like protein 16R |
| 产物 | 14-3-3-like protein 16R |
| Arabidopsis | AT1G78300 (GRF2)ral regulatory factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:844165] identity=87.9; qcov=1.01; evalue=6.87e-166; confidence=high |
| Rice | Os03g0710800 (GF14F)- identity=83.1; qcov=1; evalue=2.83e-151; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0007165 (signal transduction) |
| KEGG | smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00244 (14-3-3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001462 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057783837.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057783838.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057783838.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783837.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783837.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:16762258 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,A21 |
Chr8:16762261 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | A18,A21,C37 |
Chr8:16762261 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,A21,C37 |
Chr8:16762263 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,A21 |
Chr8:16762277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,A21 |
Chr8:16762293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,A21 |
Chr8:16762302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,A21 |
Chr8:16762376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr8:16762406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B29,B4,C36,C38,C55 |
Chr8:16762427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B29,B4,C36,C38,C55 |
Chr8:16762454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr8:16763681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783837.1PF00244
14-3-3 11-235 aa
XP_057783838.1PF00244
14-3-3 11-235 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783837.1 |
Pfam | PF00244 |
14-3-3 | Repeat | 11 | 235 | 4.2e-106 | 354.3 | 14-3-3 protein |
XP_057783838.1 |
Pfam | PF00244 |
14-3-3 | Repeat | 11 | 235 | 3.3e-106 | 354.6 | 14-3-3 protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。