当前解析结果
SmilChr08G001939| 统一新 Gene ID | SmilChr08G001939 |
|---|---|
| 名称 | SmilChr08G001939 |
| 描述 | uncharacterized SmilChr08G001939 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 17023351 - 17024488 / - |
| NCBI Gene ID | LOC130998133 |
|---|---|
| GeneID | 130998133 |
| locus_tag | - |
| NCBI Name | LOC130998133 |
| 原始查询 | SmilChr08G001939 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666]; symbol=AT3G29765; hit=AT3G29765; species=arabidopsis; confidence=high |
| 产物 | ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666]; symbol=AT3G29765; hit=AT3G29765; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G29765 (AT3G29765)ral transcription factor 2-related zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:822666] identity=48.3; qcov=0.98; evalue=9.43e-116; confidence=high |
| Rice | Os02g0301400- identity=32.9; qcov=0.668; evalue=7.76e-36; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998133 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779550.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057779550.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779550.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779550.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779550.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:17023363 |
CT |
C |
1bp_deletion | frameshift_variant | 19 | A1,A9,B10,B105,B106,B125,B28,B5,B52,B75,B79,B83,B93,C13,C34,C52,C62,C77,C81 |
Chr8:17023383 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr8:17023511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C52,D7 |
Chr8:17023572 |
AAT |
A |
2bp_deletion | frameshift_variant | 14 | A11,A16,A24,A3,B15,B32,B41,B47,B7,C43,C45,C53,C86,D5 |
Chr8:17023599 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr8:17023624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B100,B135,B35,C61,C85 |
Chr8:17023696 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B46 |
Chr8:17023696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr8:17023797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,B31,B38,B46,C36 |
Chr8:17023804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B31,B38,C36 |
Chr8:17023825 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B97,C21,C38,C87,D1 |
Chr8:17023880 |
C |
T |
EMS_canonical_SNV | stop_gained | 120 | A1,A14,A16,A18,A21,A25,A5,A6,B1,B102,B107,B108,B11,B110,B111,B112,B113,B114,B117,B126,B127,B128,B136,B137,B139,B14,B140,B16,B17,B19,B2,B20,B21,B22,B23,B24,B25,B27,B29,B3,B33,B36,B4,B42,B43,B44,B46,B49,B53,B56,B57,B59,B62,B63,B65,B67,B69,B73,B76,B78,B79,B80,B81,B83,B86,B87,B93,B96,B97,B98,C1,C11,C12,C13,C15,C16,C17,C18,C2,C20,C21,C22,C24,C25,C26,C30,C31,C32,C36,C37,C38,C4,C40,C42,C44,C46,C47,C49,C5,C53,C54,C56,C57,C58,C6,C61,C62,C68,C69,C74,C76,C8,C82,C83,C84,C87,D1,D10,D2,D7 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。