Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001944`

染色体: Chr08 坐标: 17086595-17089872 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001944`
名称	SmilChr08G001944
描述	zinc-finger homeodomain protein 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17086595 - 17089872 / `+`

ID 对照

NCBI Gene ID	`LOC131001481`
GeneID	`131001481`
locus_tag	`-`
NCBI Name	`LOC131001481`
原始查询	`SmilChr08G001944`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc-finger homeodomain protein 2-like
产物	zinc-finger homeodomain protein 2-like
Arabidopsis	`AT4G24660` (HB22) homeobox protein 22 [Source:NCBI gene (formerly Entrezgene);Acc:828568] identity=51.1; qcov=0.756; evalue=1.79e-59; confidence=high
Rice	`Os09g0466400` (OsZHD1) - identity=48.5; qcov=0.931; evalue=1.24e-60; confidence=high
GO	GO:0000976 (transcription cis-regulatory region binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0050793 (regulation of developmental process)
KEGG	-
Pfam	PF04770 (ZF-HD_dimer)
InterPro	-
eggNOG	-
NR	GeneID:131001481

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783852.1`
2	Chromosome	染色体	0.00000	`XP_057783852.1`
3	Centromere	着丝粒	0.00000	`XP_057783852.1`
4	Chromatin	染色质	0.00000	`XP_057783852.1`
5	Telomere	端粒	0.00000	`XP_057783852.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17086812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr8:17086822`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B3
`Chr8:17086822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr8:17086871`	`A`	`ACT`	2bp_insertion	frameshift_variant	182	A1,A10,A11,A18,A19,A21,A22,A24,A25,A5,A6,A8,A9,B1,B100,B102,B103,B104,B109,B11,B110,B111,B114,B115,B117,B118,B119,B12,B120,B122,B123,B125,B126,B127,B128,B130,B132,B133,B134,B135,B136,B137,B138,B139,B140,B15,B17,B19,B2,B20,B21,B23,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B34,B36,B37,B38,B39,B4,B41,B42,B43,B44,B45,B46,B48,B51,B53,B54,B56,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B71,B75,B76,B78,B8,B80,B84,B85,B86,B87,B88,B9,B90,B91,B92,B93,B94,B95,C1,C11,C12,C13,C14,C15,C16,C17,C19,C21,C23,C24,C25,C26,C27,C28,C29,C30,C31,C34,C35,C36,C38,C39,C4,C41,C42,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C63,C64,C65,C67,C68,C7,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C83,C84,C86,C87,C9,D1,D11,D2,D3,D4,D5,D7,D8,D9
`Chr8:17086875`	`GAT`	`G`	2bp_deletion	frameshift_variant	191	A1,A10,A11,A18,A19,A21,A22,A24,A25,A5,A6,A8,A9,B1,B100,B102,B103,B104,B109,B11,B110,B111,B114,B115,B117,B118,B119,B12,B120,B122,B123,B124,B125,B126,B127,B128,B130,B132,B133,B134,B135,B136,B137,B138,B139,B140,B15,B17,B18,B19,B2,B20,B21,B23,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B34,B36,B37,B38,B39,B4,B41,B42,B43,B44,B45,B46,B48,B50,B51,B53,B54,B56,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B71,B72,B75,B76,B78,B8,B80,B82,B83,B84,B85,B86,B87,B88,B9,B90,B91,B92,B93,B94,B95,B98,C1,C11,C12,C13,C14,C15,C16,C17,C18,C19,C21,C23,C24,C25,C26,C27,C28,C29,C30,C31,C34,C35,C36,C38,C39,C4,C41,C42,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C62,C63,C64,C65,C67,C68,C7,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C83,C84,C86,C87,C9,D1,D11,D2,D3,D4,D5,D7,D8,D9
`Chr8:17086885`	`C`	`CT`	1bp_insertion	frameshift_variant	195	A1,A10,A11,A18,A19,A21,A22,A24,A25,A5,A6,A8,A9,B1,B100,B102,B103,B104,B108,B109,B11,B110,B111,B114,B115,B117,B118,B119,B12,B120,B122,B123,B124,B125,B126,B127,B128,B130,B132,B133,B134,B135,B136,B137,B138,B139,B140,B15,B16,B17,B18,B19,B2,B20,B21,B23,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B34,B36,B37,B38,B39,B4,B41,B42,B43,B44,B45,B46,B47,B48,B50,B51,B53,B54,B56,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B71,B72,B75,B76,B78,B8,B80,B82,B83,B84,B85,B86,B87,B88,B9,B90,B91,B92,B93,B94,B95,B98,C1,C11,C12,C13,C14,C15,C16,C17,C18,C19,C20,C21,C23,C24,C25,C26,C27,C28,C29,C30,C31,C34,C35,C36,C38,C39,C4,C41,C42,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C62,C63,C64,C65,C67,C68,C7,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C83,C84,C86,C87,C9,D1,D11,D2,D3,D4,D5,D7,D8,D9
`Chr8:17087052`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B80
`Chr8:17087052`	`C`	`CA`	1bp_insertion	CDS_variant	1	B80
`Chr8:17087057`	`AG`	`A`	1bp_deletion	frameshift_variant	18	A25,A7,B101,B104,B105,B131,B24,B4,B46,B49,B73,C10,C17,C41,C47,C53,C59,C64
`Chr8:17087060`	`G`	`GC`	1bp_insertion	frameshift_variant	18	A25,A7,B101,B104,B105,B131,B24,B4,B46,B49,B73,C10,C17,C41,C47,C53,C59,C64
`Chr8:17087113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr8:17087185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783852.1

306 aa

153

306

ZF-HD_dimer

PF04770 ZF-HD_dimer 33-85 aa

XP_057783853.1

263 aa

132

263

ZF-HD_dimer

PF04770 ZF-HD_dimer 33-85 aa

XP_057783854.1

248 aa

124

248

ZF-HD_dimer

PF04770 ZF-HD_dimer 33-85 aa

XP_057783855.1

246 aa

123

246

ZF-HD_dimer

PF04770 ZF-HD_dimer 33-85 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783852.1`	Pfam	`PF04770`	ZF-HD_dimer	Family	33	85	5.8e-29	100.9	ZF-HD protein dimerisation region
`XP_057783853.1`	Pfam	`PF04770`	ZF-HD_dimer	Family	33	85	4e-29	101.4	ZF-HD protein dimerisation region
`XP_057783854.1`	Pfam	`PF04770`	ZF-HD_dimer	Family	33	85	4.1e-29	101.4	ZF-HD protein dimerisation region
`XP_057783855.1`	Pfam	`PF04770`	ZF-HD_dimer	Family	33	85	4.1e-29	101.4	ZF-HD protein dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057927870.1
ATCTTATGCATAATCTTATCCACTCCACCTCTCTAAACTCAAAATTTGTACCCCAAAAATCAAAATAAATTAAGACAAAAAGAGAACCCAATGTACAGGTAGCCGGTGGGTGAATCCTAGGGCTAAGTAATGCACGTATTCAAGGAAAAAATAATATTACTATATATAGCTGATATCATATTAATTAATCCGCTGAATTTAAGCTCGAAATTATGGAGTATGAAGATCAAGAAGAGGAGCAAGAGGGAGAGGTAGGCTAC...

XM_057927872.1
CCAAAAATCAAAATAAATTAAGACAAAAAGAGAACCCAATGTACAGGTAGCCGGTGGGTGAATCCTAGGGCTAAGTAATGCACGTATTCAAGGAAAAAATAATATTACTATATATAGCTGATATCATATTAATTAATCCGCTGAATTTAAGCTCGAAATTATGGAGTATGAAGATCAAGAAGAGGAGCAAGAGGGAGAGGTAGGCTACAACAATGAGCCGGGCAACAAGATCCCGAGCCCGCCGGCGCTGCGGAAGGCCC...

CDS

4 records

下载 CDS FASTA

LOC131001481
ATGGAGTATGAAGATCAAGAAGAGGAGCAAGAGGGAGAGGTAGGCTACAACAATGAGCCGGGCAACAAGATCCCGAGCCCGCCGGCGCTGCGGAAGGCCCGGTACAAGGAGTGCCTCAAGAACCACGCCGTGGGCATCGGGGCCCACGCCGTGGACGGCTGCGGCGAGTTCCTCCCGGCGGGGGACGACGGCTCGCTCGAGTCCCTCAAGTGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGGGAGAGCGAGGG...

Protein

4 records

下载 Protein FASTA

XP_057783852.1
MEYEDQEEEQEGEVGYNNEPGNKIPSPPALRKARYKECLKNHAVGIGAHAVDGCGEFLPAGDDGSLESLKCAACGCHRNFHRRESEGYGNQQLVLAHHPHPLGHFGYRSSGGYLQVGPPQRAAPVALALPSSSGGAGEMEDYYSGGGGGSSKKRFRTKFTAEQKDRMLRLAERLDWKIQKQDEELVQQFCSEAGIKRHVLKVWMHNNKHTLEKPEAFCTAFIACVVGRISNFVLLFFSFCISWEKFLLTFFFLLFHHTPL...

XP_057783853.1
MEYEDQEEEQEGEVGYNNEPGNKIPSPPALRKARYKECLKNHAVGIGAHAVDGCGEFLPAGDDGSLESLKCAACGCHRNFHRRESEGYGNQQLVLAHHPHPLGHFGYRSSGGYLQVGPPQRAAPVALALPSSSGGAGEMEDYYSGGGGGSSKKRFRTKFTAEQKDRMLRLAERLDWKIQKQDEELVQQFCSEAGIKRHVLKVWMHNNKHTLEKPEAFCTAFIACVVDFTAIACLHFILCTSNAINYIDWIEKEDKGRRRR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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