Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001952`

染色体: Chr08 坐标: 17182789-17184070 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001952`
名称	SmilChr08G001952
描述	mitochondrial uncoupling protein 5-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17182789 - 17184070 / `+`

ID 对照

NCBI Gene ID	`LOC131001491`
GeneID	`131001491`
locus_tag	`-`
NCBI Name	`LOC131001491`
原始查询	`SmilChr08G001952`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitochondrial uncoupling protein 5-like
产物	mitochondrial uncoupling protein 5-like
Arabidopsis	`AT2G22500` (UCP5) uncoupling protein 5 [Source:NCBI gene (formerly Entrezgene);Acc:816783] identity=75.9; qcov=1; evalue=1.64e-168; confidence=high
Rice	`Os09g0465400` - identity=64.6; qcov=1.02; evalue=2.37e-129; confidence=high
GO	GO:0008272 (GO:0008272); GO:0015116 (sulfate transmembrane transporter activity); GO:0015117 (thiosulfate transmembrane transporter activity); GO:0015131 (oxaloacetate transmembrane transporter activity); GO:0015140 (malate transmembrane transporter activity); GO:0015141 (succinate transmembrane transporter activity); GO:0015297 (antiporter activity); GO:0015709 (thiosulfate transport); GO:0015729 (oxaloacetate transport); GO:0035435 (phosphate ion transmembrane transport); GO:0071422 (succinate transmembrane transport); GO:0071423 (malate transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131001491

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057783863.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057783863.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057783863.1`
4	Nucleus	细胞核	0.00000	`XP_057783863.1`
5	Chromosome	染色体	0.00000	`XP_057783863.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17183079`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B86
`Chr8:17183079`	`CT`	`C`	1bp_deletion	CDS_variant	1	B86
`Chr8:17183225`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B24
`Chr8:17183234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr8:17183255`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B47,B55
`Chr8:17183294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr8:17183349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B21,C5
`Chr8:17183400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,C67
`Chr8:17183643`	`AG`	`A`	1bp_deletion	frameshift_variant	2	C22,C46
`Chr8:17183643`	`AG`	`A`	1bp_deletion	CDS_variant	2	C22,C46
`Chr8:17183723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr8:17183816`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B15,B54,B73,B81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783863.1

315 aa

158

315

Mito_carr

PF00153 Mito_carr 9-115 aa PF00153 Mito_carr 121-216 aa PF00153 Mito_carr 224-313 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783863.1`	Pfam	`PF00153`	Mito_carr	Repeat	9	115	4.2e-63	209.8	Mitochondrial carrier protein
`XP_057783863.1`	Pfam	`PF00153`	Mito_carr	Repeat	121	216	4.2e-63	209.8	Mitochondrial carrier protein
`XP_057783863.1`	Pfam	`PF00153`	Mito_carr	Repeat	224	313	4.2e-63	209.8	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927880.1
AGTTGGTCGCCATAAAATGGCTCTTACACTCTTTAATGTTTCTTTCCTCCCAACTTCTCTCATTTTTATTTTGTGTATATATATATCATTCCCACACACCCTCCAAATCACTCATCTTCTCTAACACCTTAGCTCTCACTTTGAAACACATATATATAGTTTTTTTCAATTGAGATTTTCTAATTCTTCATACAAAGATGGGTTTGAAGGGATTTGAAGAAGGCGGCGTTGCTTCGATCGTGGCCGGTTGCAGCACCCAC...

CDS

1 records

下载 CDS FASTA

LOC131001491
ATGGGTTTGAAGGGATTTGAAGAAGGCGGCGTTGCTTCGATCGTGGCCGGTTGCAGCACCCACCCTCTTGATCTGATCAAGGTGAGGATGCAGCTTCAGGGAGAGCCCGCCGCCGTTCAATCTCTCCGGCCTGCCCTCGCTTTCCAAACAGCCGCTGCTTCTCACGCCGTCCACATGCCTACTCCTCCAGCCCGCGTGGGACCAGTCTCGGTAGGACTCCGCATCATCCAGCATGACGGCGCCGCCGGGCTCTTCTCCGG...

Protein

1 records

下载 Protein FASTA

XP_057783863.1
MGLKGFEEGGVASIVAGCSTHPLDLIKVRMQLQGEPAAVQSLRPALAFQTAAASHAVHMPTPPARVGPVSVGLRIIQHDGAAGLFSGVSATVLRQTLYSTTRMGLYEILKNKWTDSETNSLPLPRKIAAGLIAGGVGAAVGNPADVAMVRMQADGRLPLEQRRNYKSVVDAISQMSKKEGIASLWRGSSLTVNRAMVVTASQLASYDQFKEMILEKNLMRDGLGTHVTASFAAGFVAAVASNPVDVVKTRVMNMKVEAGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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