Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001953`

染色体: Chr08 坐标: 17193907-17195125 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001953`
名称	SmilChr08G001953
描述	mitochondrial uncoupling protein 5-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17193907 - 17195125 / `-`

ID 对照

NCBI Gene ID	`LOC131001492`
GeneID	`131001492`
locus_tag	`-`
NCBI Name	`LOC131001492`
原始查询	`SmilChr08G001953`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mitochondrial uncoupling protein 5-like
产物	mitochondrial uncoupling protein 5-like
Arabidopsis	`AT2G22500` (UCP5) uncoupling protein 5 [Source:NCBI gene (formerly Entrezgene);Acc:816783] identity=75.6; qcov=1; evalue=1.09e-168; confidence=high
Rice	`Os09g0465400` - identity=64.7; qcov=1.03; evalue=5.74e-130; confidence=high
GO	GO:0008272 (GO:0008272); GO:0015116 (sulfate transmembrane transporter activity); GO:0015117 (thiosulfate transmembrane transporter activity); GO:0015131 (oxaloacetate transmembrane transporter activity); GO:0015140 (malate transmembrane transporter activity); GO:0015141 (succinate transmembrane transporter activity); GO:0015297 (antiporter activity); GO:0015709 (thiosulfate transport); GO:0015729 (oxaloacetate transport); GO:0035435 (phosphate ion transmembrane transport); GO:0071422 (succinate transmembrane transport); GO:0071423 (malate transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:131001492

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057783864.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057783864.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057783864.1`
4	Nucleus	细胞核	0.00000	`XP_057783864.1`
5	Chromosome	染色体	0.00000	`XP_057783864.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17194129`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:17194202`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr8:17194300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr8:17194321`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B63
`Chr8:17194321`	`GC`	`G`	1bp_deletion	CDS_variant	1	B63
`Chr8:17194325`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C46
`Chr8:17194325`	`TC`	`T`	1bp_deletion	CDS_variant	1	C46
`Chr8:17194420`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B31,B95
`Chr8:17194440`	`TA`	`T`	1bp_deletion	frameshift_variant	37	A1,A19,B101,B102,B109,B126,B127,B133,B14,B15,B21,B23,B28,B50,B52,B53,B57,B6,B82,B87,B91,C16,C32,C4,C47,C61,C62,C63,C67,C70,C76,C79,C8,C81,C84,D6,D8
`Chr8:17194456`	`CTT`	`C`	2bp_deletion	frameshift_variant	38	A1,A19,B101,B102,B109,B126,B127,B133,B137,B14,B15,B21,B23,B28,B50,B52,B53,B57,B6,B69,B79,B82,B87,B91,C16,C32,C4,C47,C61,C62,C63,C67,C79,C8,C81,C84,D6,D8
`Chr8:17194460`	`CT`	`C`	1bp_deletion	frameshift_variant	35	A1,A19,B101,B102,B109,B126,B127,B133,B137,B14,B15,B21,B23,B28,B50,B52,B57,B6,B69,B79,B82,B87,B91,C16,C32,C4,C47,C61,C63,C67,C79,C8,C81,C84,D6
`Chr8:17194574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783864.1

315 aa

158

315

Mito_carr

PF00153 Mito_carr 5-115 aa PF00153 Mito_carr 121-216 aa PF00153 Mito_carr 224-313 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783864.1`	Pfam	`PF00153`	Mito_carr	Repeat	5	115	1.3e-63	211.4	Mitochondrial carrier protein
`XP_057783864.1`	Pfam	`PF00153`	Mito_carr	Repeat	121	216	1.3e-63	211.4	Mitochondrial carrier protein
`XP_057783864.1`	Pfam	`PF00153`	Mito_carr	Repeat	224	313	1.3e-63	211.4	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927881.1
CCTTCTCTCTCTCCCTACCCTATCATCTATATATACCCTTCTCACTCAAACTCAATCACTCACTAATTTCCTTACACACATCTCAACCTTTTTAGCTTCCAATTCTTCATTCTTTGTTTAGTTTGCAACAGAAACAAAAATGGGTTTGAAGGGATTTGCAGAAGGCGGCGTTGCTTCGATCGTGGCCGGTTGCAGCACCCACCCTCTTGATCTGATCAAGGTGAGGATGCAGCTTCAGGGAGAGCCCGCCGCCGTTCAAT...

CDS

1 records

下载 CDS FASTA

LOC131001492
ATGGGTTTGAAGGGATTTGCAGAAGGCGGCGTTGCTTCGATCGTGGCCGGTTGCAGCACCCACCCTCTTGATCTGATCAAGGTGAGGATGCAGCTTCAGGGAGAGCCCGCCGCCGTTCAATCTCTCCGGCCTGCCCTCGCTTTCCAAACAGCAGCTGCTTCTCACGCCGTCCACATGCCTCCTCCTCCAGCCCGCGTGGGACCAGTCTCGGTAGGACTCCGCATCATCCAGCATGACGGCGCCGCCGGGCTCTTCTCCGG...

Protein

1 records

下载 Protein FASTA

XP_057783864.1
MGLKGFAEGGVASIVAGCSTHPLDLIKVRMQLQGEPAAVQSLRPALAFQTAAASHAVHMPPPPARVGPVSVGLRIIQHDGAAGLFSGVSATVLRQTLYSTTRMGLYEILKNKWTDSETNSLPLPRKIAAGLIAGGVGAAVGNPADVAMVRMQADGRLPLEQRRNYKSVVDAISQMSKKEGIASLWRGSSLTVNRAMVVTASQLASYDQFKEMILEKNLMRDGLGTHVTASFAAGFVAAVASNPVDVVKTRVMNMKVEAGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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