Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001980`

染色体: Chr08 坐标: 17503813-17506179 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001980`
名称	SmilChr08G001980
描述	receptor-like cytosolic serine/threonine-protein kinase RBK1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17503813 - 17506179 / `-`

ID 对照

NCBI Gene ID	`LOC131001513`
GeneID	`131001513`
locus_tag	`-`
NCBI Name	`LOC131001513`
原始查询	`SmilChr08G001980`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like cytosolic serine/threonine-protein kinase RBK1
产物	receptor-like cytosolic serine/threonine-protein kinase RBK1
Arabidopsis	`AT5G10520` (RBK1) ROP binding protein kinases 1 [Source:NCBI gene (formerly Entrezgene);Acc:830917] identity=51.8; qcov=1.08; evalue=6.08e-174; confidence=high
Rice	`Os06g0663900` (OsRLCK212) - identity=49.6; qcov=0.993; evalue=2.69e-143; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131001513

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057783891.1`
2	Cytosol	细胞质基质	0.20000	`XP_057783891.1`
3	Nucleus	细胞核	0.00000	`XP_057783892.1`
4	Chromosome	染色体	0.00000	`XP_057783892.1`
5	Centromere	着丝粒	0.00000	`XP_057783892.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17504148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:17504160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B19,B31,C42
`Chr8:17504235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr8:17504250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B55,C58,D4
`Chr8:17504264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr8:17504330`	`G`	`A`	EMS_canonical_SNV	stop_gained	19	A5,B1,B102,B113,B120,B135,B16,B25,B36,B49,B57,B68,B7,B79,C42,C46,C54,C63,C7
`Chr8:17504338`	`CT`	`C`	1bp_deletion	frameshift_variant	6	A22,B109,B28,C27,C63,C67
`Chr8:17504356`	`C`	`CAA`	2bp_insertion	frameshift_variant	1	C16
`Chr8:17504356`	`C`	`CAA`	2bp_insertion	CDS_variant	1	C16
`Chr8:17504360`	`C`	`CG`	1bp_insertion	frameshift_variant	1	C16
`Chr8:17504360`	`C`	`CG`	1bp_insertion	CDS_variant	1	C16
`Chr8:17504363`	`G`	`GA`	1bp_insertion	frameshift_variant	12	B130,B135,B27,B40,B5,B50,B71,C42,C48,C54,C8,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783891.1

482 aa

241

482

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 126-394 aa PF07714 PK_Tyr_Ser-Thr 128-390 aa

XP_057783892.1

459 aa

230

459

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 126-389 aa PF07714 PK_Tyr_Ser-Thr 128-392 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783891.1`	Pfam	`PF00069`	Pkinase	Domain	126	394	7.3e-41	141.0	Protein kinase domain
`XP_057783891.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	128	390	1.7e-42	146.2	Protein tyrosine and serine/threonine kinase
`XP_057783892.1`	Pfam	`PF00069`	Pkinase	Domain	126	389	3.9e-40	138.6	Protein kinase domain
`XP_057783892.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	128	392	6.3e-43	147.7	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927908.1
CATAAATATACCGGTAATTTGTACTCTCTTCACCACAGAGCCCACTTTCCGCTTTCCCTCTCCTCTCTCTCCAAGGATCATCAACCATTTCAGAAGTAACACCAGCTTCTTCTCTCCCACCATTCTCTCTTTCTCTCTCTCTCCTCTGTTCTTGCCAAGCGCGAGCGGGAGAGGGAAAGAAAGCTCTTTAATCAATCAAATTTCATCCCATGGCGATCGAAGACATTGGAAGAAAGCAGAGAAATAGAAAGAATCTGGAA...

XM_057927909.1
AATATACCGGTAATTTGTACTCTCTTCACCACAGAGCCCACTTTCCGCTTTCCCTCTCCTCTCTCTCCAAGGATCATCAACCATTTCAGAAGTAACACCAGCTTCTTCTCTCCCACCATTCTCTCTTTCTCTCTCTCTCCTCTGTTCTTGCCAAGCGCGAGCGGGAGAGGGAAAGAAAGCTCTTTAATCAATCAAATTTCATCCCATGGCGATCGAAGACATTGGAAGAAAGCAGAGAAATAGAAAGAATCTGGAAACGG...

CDS

2 records

下载 CDS FASTA

LOC131001513
ATGGCGATCGAAGACATTGGAAGAAAGCAGAGAAATAGAAAGAATCTGGAAACGGAGACGTCGCGGAAGGGGGTGGAAGAAAGCGATGAGGAGACGTCCCCTCGTGGAGTGCTTGAGATGCTGATGTCGGAGAAATCGGGAGAGCTAAGCAATCTGCAGTGGAAGAAGATGTTCGGGCAGGTGAAGAAGTCGTCTTCCGTGTGGAAGATATCGACCATCTCGATGCTCGGAGGGGGCAACGGGCTGTCCAAGAAGGCGCT...

Protein

2 records

下载 Protein FASTA

XP_057783891.1
MAIEDIGRKQRNRKNLETETSRKGVEESDEETSPRGVLEMLMSEKSGELSNLQWKKMFGQVKKSSSVWKISTISMLGGGNGLSKKALRKKMGRRSNSEDTGDFVMPKPSWRNFSYDELRQATHGFSSDKLIGKGGHAEVYKGKLYDGQVVAVKKIMKEEKNDEEKNGDFLAELGIIAHIDHPNAAKLIGFSADQGLYLVLQYLPYGSLATALHGSADCRLEWGTRYKVAIGVAKGLQYLHSSCQRRIIHRDITASNILLS...

XP_057783892.1
MAIEDIGRKQRNRKNLETETSRKGVEESDEETSPRGVLEMLMSEKSGELSNLQWKKMFGQVKKSSSVWKISTISMLGGGNGLSKKALRKKMGRRSNSEDTGDFVMPKPSWRNFSYDELRQATHGFSSDKLIGKGGHAEVYKGKLYDGQVVAVKKIMKEEKNDEEKNGDFLAELGIIAHIDHPNAAKLIGFSADQGLYLVLQYLPYGSLATALHGSADCRLEWGTRYKVAIGVAKGLQYLHSSCQRRIIHRDITASNILLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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