Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001998`

染色体: Chr08 坐标: 17724478-17727290 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001998`
名称	SmilChr08G001998
描述	uncharacterized SmilChr08G001998
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17724478 - 17727290 / `-`

ID 对照

NCBI Gene ID	`LOC131001568`
GeneID	`131001568`
locus_tag	`-`
NCBI Name	`LOC131001568`
原始查询	`SmilChr08G001998`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521]; symbol=AT1G09890; hit=AT1G09890; species=arabidopsis; confidence=high
产物	Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521]; symbol=AT1G09890; hit=AT1G09890; species=arabidopsis; confidence=high
Arabidopsis	`AT1G09890` (AT1G09890) Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521] identity=53.7; qcov=0.983; evalue=0; confidence=high
Rice	`Os08g0554100` - identity=52.9; qcov=0.985; evalue=0; confidence=high
GO	GO:0003824 (catalytic activity); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF06045 (Rhamnogal_lyase); PF14683 (CBM-like); PF14686 (fn3_3)
InterPro	-
eggNOG	-
NR	GeneID:131001568

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057784021.1`
2	Nucleus	细胞核	0.00000	`XP_057784021.1`
3	Chromosome	染色体	0.00000	`XP_057784021.1`
4	Centromere	着丝粒	0.00000	`XP_057784021.1`
5	Chromatin	染色质	0.00000	`XP_057784021.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17724559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr8:17724607`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C22
`Chr8:17724607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr8:17724608`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:17724623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,C15
`Chr8:17724664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr8:17724680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A15,B58,C72,D9
`Chr8:17724683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr8:17724697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:17724902`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr8:17725156`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B36,B49
`Chr8:17725296`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784021.1

532 aa

266

532

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 1-81 aa PF14686 fn3_3 238-308 aa PF14683 CBM-like 323-515 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784021.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	1	81	1.1e-28	100.8	Rhamnogalacturonate lyase family
`XP_057784021.1`	Pfam	`PF14686`	fn3_3	Domain	238	308	4.2e-22	78.4	Polysaccharide lyase family 4, domain II
`XP_057784021.1`	Pfam	`PF14683`	CBM-like	Domain	323	515	1.4e-45	155.7	Polysaccharide lyase family 4, domain III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928038.1
GGTACGTCATGTTGCGTGGGTCTCCTGGATTCTATACATATGTTGTACTTGAACGTTTAAAAGGGTGGCCTTCTTTTCGTATACAAGAAGGAAGAATCGTCTTCAAACTTCAAGAAAACAAGTTTCACTACATGGCTATGTCTGATGAAAGGCAAAGGTTGATGCCAACGCCTGAGGATCGTAAATCTGGCATTCCTCTTGCTTATAAGGAAGCTATTCTCTTAACTAATCCCAAATTCAAAGGAGAGGTGGATGATAAA...

CDS

1 records

下载 CDS FASTA

LOC131001568
ATGTTGCGTGGGTCTCCTGGATTCTATACATATGTTGTACTTGAACGTTTAAAAGGGTGGCCTTCTTTTCGTATACAAGAAGGAAGAATCGTCTTCAAACTTCAAGAAAACAAGTTTCACTACATGGCTATGTCTGATGAAAGGCAAAGGTTGATGCCAACGCCTGAGGATCGTAAATCTGGCATTCCTCTTGCTTATAAGGAAGCTATTCTCTTAACTAATCCCAAATTCAAAGGAGAGGTGGATGATAAATACTTGTA...

Protein

1 records

下载 Protein FASTA

XP_057784021.1
MLRGSPGFYTYVVLERLKGWPSFRIQEGRIVFKLQENKFHYMAMSDERQRLMPTPEDRKSGIPLAYKEAILLTNPKFKGEVDDKYLYSCDNEDNKVHGWVSNDTVPLGFWMITPSNEFRTGGPIKQDLTSHVGPTLLSMFISRHYAGAEMDVTFEAQDYWKKVFGPNYVYLNSDVSARTDPSILWNDAKLRMQKEVADWPYNFLRSVEYLKSDQRGSLSGQLHVHDRFVSLQPVPAASAYVGLAPPGAAGSWQIENKGYQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器