Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001999`

染色体: Chr08 坐标: 17730508-17734003 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001999`
名称	SmilChr08G001999
描述	E3 ubiquitin-protein ligase HAKAI homolog
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17730508 - 17734003 / `+`

ID 对照

NCBI Gene ID	`LOC131001588`
GeneID	`131001588`
locus_tag	`-`
NCBI Name	`LOC131001588`
原始查询	`SmilChr08G001999`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase HAKAI homolog
产物	E3 ubiquitin-protein ligase HAKAI homolog
Arabidopsis	`AT5G01160` (AT5G01160) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831742] identity=52.4; qcov=0.821; evalue=2.15e-97; confidence=high
Rice	`Os10g0494500` (OsRFP) - identity=46.5; qcov=0.8; evalue=1.44e-80; confidence=high
GO	GO:0016567 (protein ubiquitination); GO:0030155 (regulation of cell adhesion); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131001588

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784065.1`
2	Nucleoplasm	核质	1.00000	`XP_057784065.1`
3	Cytoplasm	细胞质	0.80000	`XP_057784065.1`
4	Cytosol	细胞质基质	0.80000	`XP_057784065.1`
5	Nuclear body	核内小体	0.40000	`XP_057784067.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17730960`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B27
`Chr8:17730960`	`CT`	`C`	1bp_deletion	CDS_variant	1	B27
`Chr8:17731124`	`CCG`	`C`	2bp_deletion	frameshift_variant	1	B18
`Chr8:17731124`	`CCG`	`C`	2bp_deletion	CDS_variant	1	B18
`Chr8:17731161`	`C`	`T`	EMS_canonical_SNV	stop_gained	46	A13,A14,A19,A24,A8,A9,B11,B117,B126,B128,B134,B139,B21,B29,B45,B49,B53,B54,B58,B64,B72,B79,B85,B91,B97,C10,C11,C17,C20,C24,C28,C32,C37,C39,C40,C41,C51,C53,C57,C59,C69,C74,C79,D5,D6,D7
`Chr8:17732700`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,B8
`Chr8:17732800`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr8:17733038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr8:17733276`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	D7
`Chr8:17733276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr8:17733376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr8:17733403`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057928084.1
ATAGATAATAGATAAACAGCATAATATCGTTTTAGGGCTAGAAATCCTAATATCAGATCCCTTCCCTTTTCCAAAAATCAGACGATTTCTCGAATTCTATCACGCTAACTTCGATCAATACACTGATTTTAGTATTAGATTTTTCTGTGAGCGGTTTCGAAAGCTCAGCTGTAATGTCGTATATTCACCGATTCGAAAATCAATAAGAAATAGAATCAGGCAGTGGTTGTTTTCCGAGTTGGAAGTCTAAATTGTACACA...

XM_057928082.1
ACAGCATAATATCGTTTTAGGGCTAGAAATCCTAATATCAGATCCCTTCCCTTTTCCAAAAATCAGACGATTTCTCGAATTCTATCACGCTAACTTCGATCAATACACTGATTTTAGTATTAGATTTTTCTGTGAGCGGTTTCGAAAGCTCAGCTGTAATGTCGTATATTCACCGATTCGAAAATCAATAAGAAATAGAATCAGGCAGTGGTTGTTTTCCGAGTTGGAAGTCTAAATTGTACACACACACACACTAGTAA...

CDS

3 records

下载 CDS FASTA

LOC131001588
ATGCTGCAGATTCGGCTTAGCAAGCCAGCTAGTGAAACTGGTGCAACTGCAAAACCTGTGCCTGTGGAGACCGTCACAGTTGCTTGCCCCGATCATCTTGTGTTAGCTGATCTTCCTGTGGCGAAGGGTCTGGGTACAGCATCTGCAACTGCTGTTATCAAGTCTGTTGGACGACGCTCCCGTCGCCAGCTTGGCGAGCGTGTTCATTTCTGTGTTCGATGCGACTTTCCCGTCGCTATTTATGGGCGTCTGAGCCCATG...

Protein

3 records

下载 Protein FASTA

XP_057784065.1
MLQIRLSKPASETGATAKPVPVETVTVACPDHLVLADLPVAKGLGTASATAVIKSVGRRSRRQLGERVHFCVRCDFPVAIYGRLSPCEHAFCLDCARSHSLCYLCDERIQKIQTIKMMEGIFICAAPHCLKSFLKKSEFELHINEVHADLLHPNKEKEGNESEAMSARKPSASDTTVQAPLRPVFSPHSSSQVHDREDKAQLPQSREQPPTRPAVQTRPTPPFPGQTPDHPPEHPDSIPSHPFDRATSQNHFPQQTFEVH...

XP_057784066.1
MLQIRLSKPASETGATAKPVPVETVTVACPDHLVLADLPVAKGLGTASATAVIKSVGRRSRRQLGERVHFCVRCDFPVAIYGRLSPCEHAFCLDCARSHSLCYLCDERIQKIQTIKMMEGIFICAAPHCLKSFLKKSEFELHINEVHADLLHPNKEKEGNESEAMSARKPSASDTTVQAPLRPVFSPHSSSQVHDREDKAQLPQSREQPPTRPAVQTRPTPPFPGQTPDHPPEHPDSIPSHPFDRATSQNHFPQQTFEVH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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