Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002017`

染色体: Chr08 坐标: 17944914-17947593 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002017`
名称	SmilChr08G002017
描述	polyprenol reductase 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17944914 - 17947593 / `-`

ID 对照

NCBI Gene ID	`LOC131001621`
GeneID	`131001621`
locus_tag	`-`
NCBI Name	`LOC131001621`
原始查询	`SmilChr08G002017`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	polyprenol reductase 2-like
产物	polyprenol reductase 2-like
Arabidopsis	`AT2G16530` (AT2G16530) 3-oxo-5-alpha-steroid 4-dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816152] identity=57.6; qcov=0.938; evalue=1.07e-138; confidence=high
Rice	`Os04g0576800` - identity=52; qcov=0.975; evalue=1.04e-118; confidence=high
GO	GO:0003865 (3-oxo-5-alpha-steroid 4-dehydrogenase activity); GO:0005783 (endoplasmic reticulum); GO:0006488 (dolichol-linked oligosaccharide biosynthetic process); GO:0016095 (polyprenol catabolic process); GO:0019408 (GO:0019408)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF02544 (Steroid_dh)
InterPro	-
eggNOG	-
NR	GeneID:131001621

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057784140.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057784140.1`
3	Nucleus membrane	核膜	0.20000	`XP_057784140.1`
4	Nucleus	细胞核	0.00000	`XP_057784142.1`
5	Chromosome	染色体	0.00000	`XP_057784142.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17945093`	`G`	`A`	EMS_canonical_SNV	stop_gained	240	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A22,A23,A24,A25,A3,A4,A5,A6,A7,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B45,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B73,B75,B76,B77,B78,B79,B8,B81,B82,B83,B84,B86,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C63,C64,C65,C66,C67,C68,C69,C7,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D3,D4,D5,D6,D7,D8
`Chr8:17945116`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr8:17945128`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:17945132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:17945152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:17945156`	`G`	`A`	EMS_canonical_SNV	stop_gained	219	A1,A10,A11,A13,A14,A15,A16,A18,A19,A20,A22,A23,A24,A3,A4,A5,A7,A9,B1,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B120,B121,B124,B125,B126,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B140,B15,B17,B18,B2,B20,B21,B22,B23,B24,B25,B26,B27,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B4,B42,B43,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B55,B56,B57,B58,B59,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B86,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C11,C12,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C31,C32,C33,C34,C35,C36,C37,C39,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C63,C64,C65,C66,C67,C68,C69,C7,C71,C72,C73,C74,C75,C76,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D3,D4,D5,D6,D7,D8
`Chr8:17945157`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:17945182`	`ATG`	`A`	2bp_deletion	frameshift_variant	209	A1,A10,A11,A13,A14,A15,A16,A18,A19,A20,A21,A22,A23,A24,A3,A4,A5,A7,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B108,B109,B110,B111,B112,B113,B114,B115,B117,B118,B119,B120,B121,B124,B126,B129,B13,B131,B132,B133,B134,B135,B136,B137,B138,B140,B15,B17,B18,B2,B20,B21,B22,B24,B25,B26,B27,B29,B3,B30,B31,B32,B33,B34,B35,B37,B38,B4,B40,B42,B43,B45,B47,B48,B49,B5,B50,B51,B52,B53,B55,B56,B58,B59,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B75,B76,B77,B78,B79,B8,B81,B82,B83,B84,B86,B88,B9,B90,B91,B92,B93,B96,B97,B98,B99,C1,C11,C12,C14,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C3,C31,C32,C33,C34,C35,C36,C37,C39,C40,C41,C42,C43,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C63,C64,C65,C66,C67,C68,C69,C7,C71,C72,C73,C74,C76,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D3,D4,D5,D6,D7,D8
`Chr8:17945200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,C84
`Chr8:17945432`	`CA`	`C`	1bp_deletion	frameshift_variant	82	A1,A10,A13,A15,A18,A19,A21,A23,A24,A25,B100,B103,B104,B112,B115,B125,B126,B132,B133,B138,B15,B18,B2,B23,B24,B31,B32,B34,B4,B42,B43,B46,B47,B5,B50,B55,B56,B57,B6,B60,B61,B62,B63,B64,B7,B76,B86,B93,B95,B96,C14,C17,C18,C19,C2,C20,C21,C26,C3,C31,C32,C36,C41,C44,C45,C46,C47,C54,C61,C68,C7,C71,C73,C74,C75,C78,C8,C86,C87,D3,D7,D8
`Chr8:17945447`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr8:17946212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784140.1

370 aa

185

370

Steroid_dh

PF02544 Steroid_dh 242-323 aa

XP_057784141.1

370 aa

185

370

Steroid_dh

PF02544 Steroid_dh 242-323 aa

XP_057784142.1

357 aa

178

357

Steroid_dh

PF02544 Steroid_dh 242-357 aa

XP_057784143.1

357 aa

178

357

Steroid_dh

PF02544 Steroid_dh 242-357 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784140.1`	Pfam	`PF02544`	Steroid_dh	Family	242	323	1e-10	42.5	3-oxo-5-alpha-steroid 4-dehydrogenase
`XP_057784141.1`	Pfam	`PF02544`	Steroid_dh	Family	242	323	1e-10	42.5	3-oxo-5-alpha-steroid 4-dehydrogenase
`XP_057784142.1`	Pfam	`PF02544`	Steroid_dh	Family	242	357	3.4e-24	86.3	3-oxo-5-alpha-steroid 4-dehydrogenase
`XP_057784143.1`	Pfam	`PF02544`	Steroid_dh	Family	242	357	3.4e-24	86.3	3-oxo-5-alpha-steroid 4-dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057928160.1
ACTAAACTATAACAAATTTGGGCCATTAAACAAACAAAGAGCCCGACTAAATTAAAAGACAACAATGAAAAACAACATAAAATCCAAACAAAAAACTTAATCTTGCGCCGCTTCTTTCTTCTTACTCTCGTCTCCTCTCTCTCGCATTCTTGGCAGCGCCGCTTTCCGGCCTCTCCGTGCCGCCGCCCTCGCCGGCTTGCTCAACCCTCTCGTCTCCCAGTTTCTCTAATATCCTCTTTCGATGCGCCGCCGCCCTCCCA...

XM_057928158.1
GAGCCCGACTAAATTAAAAGACAACAATGAAAAACAACATAAAATCCAAACAAAAAACTTAATCTTGCGCCGCTTCTTTCTTCTTACTCTCGTCTCCTCTCTCTCGCATTCTTGGCAGCGCCGCTTTCCGGCCTCTCCGTGCCGCCGCCCTCGCCGGCTTGCTCAACCCTCTCGTCTCCCAGTTTCTCTAATATCCTCTTTCGATGCGCCGCCGCCCTCCCAGACTCGCCCAGCCTTCCCCGTCGCCCCGCCTCCTCCGT...

CDS

4 records

下载 CDS FASTA

LOC131001621
ATGTCGTCTTGGATTGAAAGCTTCTTCAGCTCCTTAGAATCACTGCTTAATCAGGCGTCATCCATGGCGGTCGAGGCGCTGCTTAGAGCAGCCTGGATTGCATGCACGCTGCCACTTCTGGCGGCGTTGATTACCTTCCCTAAAATCAACGCATTTCGCCACTTCGTGCTTCAGCTCGCCGTCCGCGGCAAGATTATGGACTCTTCCTCCAGAAAATTCACTATTCCTCAGAAATATTTTTGTCATTTTTACATTGTTGG...

Protein

4 records

下载 Protein FASTA

XP_057784140.1
MSSWIESFFSSLESLLNQASSMAVEALLRAAWIACTLPLLAALITFPKINAFRHFVLQLAVRGKIMDSSSRKFTIPQKYFCHFYIVGVIWTTFLLVTTWIYAYKTTAIVSESSLYSSIASQLTGVSHELSLHKSHSSVVDYKYGIWKSVFLLLLMEAQILRRLIESIYVFKYSPSARMHIAGYLTGLFFYTAAPLSLCCTYSMEVFKLVANLLVEFIVKGKDRMQVTELSFWGHVYPLLQLKWYEWIGAAFFLWGWIHQL...

XP_057784141.1
MSSWIESFFSSLESLLNQASSMAVEALLRAAWIACTLPLLAALITFPKINAFRHFVLQLAVRGKIMDSSSRKFTIPQKYFCHFYIVGVIWTTFLLVTTWIYAYKTTAIVSESSLYSSIASQLTGVSHELSLHKSHSSVVDYKYGIWKSVFLLLLMEAQILRRLIESIYVFKYSPSARMHIAGYLTGLFFYTAAPLSLCCTYSMEVFKLVANLLVEFIVKGKDRMQVTELSFWGHVYPLLQLKWYEWIGAAFFLWGWIHQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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