当前解析结果
SmilChr08G002018| 统一新 Gene ID | SmilChr08G002018 |
|---|---|
| 名称 | SmilChr08G002018 |
| 描述 | probable inactive receptor kinase At1g48480 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 17970024 - 17972740 / + |
| NCBI Gene ID | LOC131001548 |
|---|---|
| GeneID | 131001548 |
| locus_tag | - |
| NCBI Name | LOC131001548 |
| 原始查询 | SmilChr08G002018 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inactive receptor kinase At1g48480 |
| 产物 | probable inactive receptor kinase At1g48480 |
| Arabidopsis | AT1G48480 (RKL1)receptor-like kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:841269] identity=57.4; qcov=0.992; evalue=0; confidence=high |
| Rice | Os04g0463000- identity=49.5; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001548 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057783988.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057783988.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057783988.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057783988.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057783988.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:17970393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr8:17970496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:17970553 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C31,C44 |
Chr8:17970554 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B76,C2 |
Chr8:17970565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B136,B56,C54 |
Chr8:17970568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,A2 |
Chr8:17970599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,D3 |
Chr8:17970602 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B104,B117,B55 |
Chr8:17970602 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B117,B55 |
Chr8:17970611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B69,C59,D3 |
Chr8:17970633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B86,C26 |
Chr8:17970654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B117,B55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783988.1PF08263
LRRNT_2 28-63 aa
PF13855
LRR_8 82-128 aa
PF00560
LRR_1 93-112 aa
PF00560
LRR_1 118-140 aa
PF00560
LRR_1 142-164 aa
PF00560
LRR_1 188-208 aa
PF00069
Pkinase 350-609 aa
PF07714
PK_Tyr_Ser-Thr 350-611 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783988.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 28 | 63 | 9.1e-07 | 29.8 | Leucine rich repeat N-terminal domain |
XP_057783988.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 82 | 128 | 4.8e-15 | 55.8 | Leucine rich repeat |
XP_057783988.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 93 | 112 | 8.6e-11 | 40.5 | Leucine Rich Repeat |
XP_057783988.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 118 | 140 | 8.6e-11 | 40.5 | Leucine Rich Repeat |
XP_057783988.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 142 | 164 | 8.6e-11 | 40.5 | Leucine Rich Repeat |
XP_057783988.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 188 | 208 | 8.6e-11 | 40.5 | Leucine Rich Repeat |
XP_057783988.1 |
Pfam | PF00069 |
Pkinase | Domain | 350 | 609 | 1.6e-37 | 130.1 | Protein kinase domain |
XP_057783988.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 350 | 611 | 1.2e-37 | 130.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。