Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002019`

染色体: Chr08 坐标: 17976661-17979931 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002019`
名称	SmilChr08G002019
描述	ADP-ribosylation factor-like protein 8c
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	17976661 - 17979931 / `-`

ID 对照

NCBI Gene ID	`LOC131001655`
GeneID	`131001655`
locus_tag	`-`
NCBI Name	`LOC131001655`
原始查询	`SmilChr08G002019`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor-like protein 8c
产物	ADP-ribosylation factor-like protein 8c
Arabidopsis	`AT5G37680` (ARLA1A) ADP-ribosylation factor-like A1A [Source:NCBI gene (formerly Entrezgene);Acc:833747] identity=85.2; qcov=0.989; evalue=5.92e-120; confidence=high
Rice	`Os02g0732500` (OsARL1b) - identity=85.9; qcov=1; evalue=1.12e-120; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0015031 (protein transport)
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc); PF09439 (SRPRB)
InterPro	-
eggNOG	-
NR	GeneID:131001655

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057784197.1`
2	Trans-golgi network	Trans-golgi network	0.80000	`XP_057784197.1`
3	Vesicle	囊泡	0.80000	`XP_057784197.1`
4	Endosome	内体	0.80000	`XP_057784197.1`
5	Cytosol	细胞质基质	0.60000	`XP_057784197.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:17977006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B63,B65,B82,C8
`Chr8:17977665`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C60
`Chr8:17977665`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr8:17977865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr8:17979076`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B139,B73,C27
`Chr8:17979133`	`G`	`GA`	1bp_insertion	frameshift_variant	55	A18,A19,A4,B10,B100,B105,B106,B111,B118,B12,B122,B123,B125,B128,B140,B23,B27,B28,B46,B51,B53,B74,B75,B81,B83,B87,B90,B92,B94,B97,C1,C11,C12,C13,C17,C18,C24,C3,C32,C34,C40,C44,C46,C51,C52,C53,C58,C59,C63,C69,C76,C82,C83,D10,D6
`Chr8:17979139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:17979147`	`GA`	`G`	1bp_deletion	frameshift_variant	4	B15,B37,C15,D7
`Chr8:17979147`	`GA`	`G`	1bp_deletion	CDS_variant	4	B15,B37,C15,D7
`Chr8:17979192`	`C`	`CAT`	2bp_insertion	frameshift_variant	28	A1,A14,A5,B106,B113,B119,B136,B139,B48,B56,B64,B69,B73,B85,B96,C10,C16,C27,C34,C38,C47,C54,C56,C81,C84,D1,D2,D9
`Chr8:17979205`	`A`	`AG`	1bp_insertion	frameshift_variant	3	A11,B80,C9
`Chr8:17979205`	`A`	`AG`	1bp_insertion	CDS_variant	3	A11,B80,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784196.1

268 aa

134

268

Arf

SRPRB

MMR_HSR1

Roc

Ras

Gtr1_RagA

PF00025 Arf 93-262 aa PF09439 SRPRB 106-229 aa PF01926 MMR_HSR1 107-214 aa PF08477 Roc 107-216 aa PF00071 Ras 107-263 aa PF04670 Gtr1_RagA 108-218 aa

XP_057784197.1

184 aa

184

Arf

Roc

SRPRB

MMR_HSR1

Ras

Gtr1_RagA

PF00025 Arf 9-178 aa PF08477 Roc 22-132 aa PF09439 SRPRB 22-146 aa PF01926 MMR_HSR1 23-130 aa PF00071 Ras 23-179 aa PF04670 Gtr1_RagA 24-135 aa

XP_057784198.1

184 aa

184

Arf

Roc

SRPRB

MMR_HSR1

Ras

Gtr1_RagA

PF00025 Arf 9-178 aa PF08477 Roc 22-132 aa PF09439 SRPRB 22-146 aa PF01926 MMR_HSR1 23-130 aa PF00071 Ras 23-179 aa PF04670 Gtr1_RagA 24-135 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784196.1`	Pfam	`PF00025`	Arf	Domain	93	262	2.4e-44	151.6	ADP-ribosylation factor family
`XP_057784196.1`	Pfam	`PF09439`	SRPRB	Domain	106	229	7.3e-07	29.4	Signal recognition particle receptor beta subunit
`XP_057784196.1`	Pfam	`PF01926`	MMR_HSR1	Family	107	214	1.7e-07	32.1	50S ribosome-binding GTPase
`XP_057784196.1`	Pfam	`PF08477`	Roc	Domain	107	216	5.1e-16	59.7	Ras of Complex, Roc, domain of DAPkinase
`XP_057784196.1`	Pfam	`PF00071`	Ras	Domain	107	263	3.5e-17	63.2	Ras family
`XP_057784196.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	108	218	1.1e-07	32.3	Gtr1/RagA G protein conserved region
`XP_057784197.1`	Pfam	`PF00025`	Arf	Domain	9	178	7.2e-45	153.3	ADP-ribosylation factor family
`XP_057784197.1`	Pfam	`PF08477`	Roc	Domain	22	132	2.1e-16	60.9	Ras of Complex, Roc, domain of DAPkinase
`XP_057784197.1`	Pfam	`PF09439`	SRPRB	Domain	22	146	2.8e-07	30.8	Signal recognition particle receptor beta subunit
`XP_057784197.1`	Pfam	`PF01926`	MMR_HSR1	Family	23	130	6.5e-08	33.4	50S ribosome-binding GTPase
`XP_057784197.1`	Pfam	`PF00071`	Ras	Domain	23	179	1.2e-17	64.7	Ras family
`XP_057784197.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	24	135	4.3e-08	33.6	Gtr1/RagA G protein conserved region
`XP_057784198.1`	Pfam	`PF00025`	Arf	Domain	9	178	7.2e-45	153.3	ADP-ribosylation factor family
`XP_057784198.1`	Pfam	`PF08477`	Roc	Domain	22	132	2.1e-16	60.9	Ras of Complex, Roc, domain of DAPkinase
`XP_057784198.1`	Pfam	`PF09439`	SRPRB	Domain	22	146	2.8e-07	30.8	Signal recognition particle receptor beta subunit
`XP_057784198.1`	Pfam	`PF01926`	MMR_HSR1	Family	23	130	6.5e-08	33.4	50S ribosome-binding GTPase
`XP_057784198.1`	Pfam	`PF00071`	Ras	Domain	23	179	1.2e-17	64.7	Ras family
`XP_057784198.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	24	135	4.3e-08	33.6	Gtr1/RagA G protein conserved region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057928214.1
CTCTCTTCAACTGGTTACAAAGTTTCCTCATTTATTGAAGATGGGCTTGTGGGATTCACTGCTCAACTGGTTACGAAGTTTATTCTACAAACAGGAAATGGAACTCTCTCTTGTAGGCCTTCAAAATGCAGGGAAGACCTCACTCGTCAACGCCATCGCTACAGGAGGCTACACTGAGGATTCGATTCCAACTGTGGGGTTCAATATGCGGAAAGTCACAAAAGGAAACGTAACTATAAAACTTTGGGACTTGGGAGGGC...

XM_057928213.1
AAACATGTAGTCTAGTTATATTCCACTCTCCTACCCCAACTTAAGAAGAAAAAAAAAAAAAAAACTACCATTATTTACGTAAATATTGAATATACTACATTGAATTCATCGCTTGAACCTTGGCTTGAAGTTCGGACCATAATCTGATGAATAAAACAAAAAACAAAAAACCAAAACAGAGAGACAGCAACAGTATTCCAAGTTGGGATTATCCCTTTTCAGTCGGTGAAGTTTCTCAATTCTCACTTTTCTTGCATTTC...

CDS

3 records

下载 CDS FASTA

LOC131001655
ATGAATAAAACAAAAAACAAAAAACCAAAACAGAGAGACAGCAACAGTATTCCAAGTTGGGATTATCCCTTTTCAGTCGGTGAAGTTTCTCAATTCTCACTTTTCTTGCATTTCAGACATCCCTTTTCCTTCCCCTTATTTCACCTATGTTTCTCCTATAAGAGATCACGAATCTGCACTATACCCTCTTTTTCTAATCTTCCTTTTCACTCATTTCACCAAAATATTTCAAAGTTTCCTCATTTATTGAAGATGGGCTT...

LOC131001655
ATGGGCTTGTGGGATTCACTGCTCAACTGGTTACGAAGTTTATTCTACAAACAGGAAATGGAACTCTCTCTTGTAGGCCTTCAAAATGCAGGGAAGACCTCACTCGTCAACGCCATCGCTACAGGAGGCTACACTGAGGATTCGATTCCAACTGTGGGGTTCAATATGCGGAAAGTCACAAAAGGAAACGTAACTATAAAACTTTGGGACTTGGGAGGGCAACGAAGATTTCGCTCCATGTGGGAACGCTATTGCCGTGG...

Protein

3 records

下载 Protein FASTA

XP_057784196.1
MNKTKNKKPKQRDSNSIPSWDYPFSVGEVSQFSLFLHFRHPFSFPLFHLCFSYKRSRICTIPSFSNLPFHSFHQNISKFPHLLKMGLWDSLLNWLRSLFYKQEMELSLVGLQNAGKTSLVNAIATGGYTEDSIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRSMWERYCRGVSAIVYVVDAADRDSIPITRSELHDLLKKPTLAGIPLLVLGNKIDKSEALTEQPLIDQLGLNSIADREVCCYMISCKETVNIDIVMEWL...

XP_057784197.1
MGLWDSLLNWLRSLFYKQEMELSLVGLQNAGKTSLVNAIATGGYTEDSIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRSMWERYCRGVSAIVYVVDAADRDSIPITRSELHDLLKKPTLAGIPLLVLGNKIDKSEALTEQPLIDQLGLNSIADREVCCYMISCKETVNIDIVMEWLIKHSKTVK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器