Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002028`

染色体: Chr08 坐标: 18080593-18082044 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002028`
名称	SmilChr08G002028
描述	uncharacterized SmilChr08G002028
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18080593 - 18082044 / `-`

ID 对照

NCBI Gene ID	`LOC130998148`
GeneID	`130998148`
locus_tag	`-`
NCBI Name	`LOC130998148`
原始查询	`SmilChr08G002028`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842892]; symbol=AT1G65810; hit=AT1G65810; species=arabidopsis; confidence=medium
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842892]; symbol=AT1G65810; hit=AT1G65810; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G65810` (AT1G65810) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842892] identity=38; qcov=0.92; evalue=2.92e-39; confidence=medium
Rice	`Os04g0599650` - identity=34.2; qcov=0.751; evalue=7.48e-27; confidence=low
GO	-
KEGG	-
Pfam	PF20073 (DUF6469)
InterPro	-
eggNOG	-
NR	GeneID:130998148

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057779564.1`
2	Nucleus	细胞核	0.60000	`XP_057779564.1`
3	Cytosol	细胞质基质	0.20000	`XP_057779564.1`
4	Chromosome	染色体	0.00000	`XP_057779564.1`
5	Centromere	着丝粒	0.00000	`XP_057779564.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18080625`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C8
`Chr8:18080625`	`GC`	`G`	1bp_deletion	CDS_variant	1	C8
`Chr8:18080672`	`A`	`AG`	1bp_insertion	frameshift_variant	7	A1,A14,A25,B21,B59,C24,C5
`Chr8:18080676`	`A`	`AAC`	2bp_insertion	frameshift_variant	83	A10,A13,A15,A18,A19,A20,A21,A22,A24,A4,A6,A8,B100,B103,B108,B109,B11,B110,B115,B118,B119,B124,B130,B137,B138,B16,B18,B20,B22,B26,B3,B34,B42,B43,B45,B47,B48,B54,B55,B57,B58,B67,B68,B71,B72,B8,B83,B84,B86,B88,B9,B90,B92,B95,C11,C12,C18,C22,C27,C28,C31,C35,C40,C44,C45,C52,C56,C57,C6,C60,C69,C70,C71,C72,C76,C77,C80,C87,D11,D2,D4,D6,D9
`Chr8:18080718`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr8:18080892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B67,B7,C33,C9
`Chr8:18080976`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr8:18080994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr8:18081010`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr8:18081011`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	C8
`Chr8:18081011`	`TCC`	`T`	2bp_deletion	CDS_variant	1	C8
`Chr8:18081014`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779564.1

249 aa

124

249

DUF6469

PF20073 DUF6469 13-214 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779564.1`	Pfam	`PF20073`	DUF6469	Domain	13	214	9.6e-43	146.8	Domain of unknown function (DUF6469)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923581.1
AAAAGCATGAAAATATAATATATAGAGATCAGATTCTTTTTGAGGGGCTATATATAGATCAGATTTGAAATAATCTATAGTAGTACATAGTTTTCCTTCATAGAGTAGACGAAGAGTCCCCGATATTCAAAATATGTATCCCTCGGTAAACGAAGAGAGTCCCAAAAGGAAACAAGGAGCCACAACTCTTCATTTTCCATCACCATCTTCTTCACTCTCAAAAAAATCAAAATAAAATCACCATCACATGCCAAGTGAGT...

CDS

1 records

下载 CDS FASTA

LOC130998148
ATGCTTGTCTCTTGGAGAAAGAAGAAGCAAGCAAATCCAGATCAGTTGGTCGATATCATTTTCTCTTGGTCCATAGATGATATAATGAACAATAATCTTTACAAGCATAATGTGAATGATATTGATGATACGTTCCCATCAGTGAAGCATTACCTCAACTCATTCATCAACCCACTCATCGAAGAAACGCACGCTGATCTGCGCTCCAACATGACCAGTTTGCATTCTGCGCCCGTTGTACAGGTCCTCGAGGTTGCAGA...

Protein

1 records

下载 Protein FASTA

XP_057779564.1
MLVSWRKKKQANPDQLVDIIFSWSIDDIMNNNLYKHNVNDIDDTFPSVKHYLNSFINPLIEETHADLRSNMTSLHSAPVVQVLEVAEDDHFEPPDNLLYELKLEEADKTAEEYEPQVGDLIVLSQVRPKCIDDLHGPHLSYHFALVQGMRDEYDFLSILSSKPINLDNADGEFRHALFAVYLTNLTTNLRIWKALHPGEEPNTGILSSVLRIDPSVRFIQDCFLCLCCTHFYCVLNNAVHADGGVWSLP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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