Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002030`

染色体: Chr08 坐标: 18088164-18093575 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002030`
名称	SmilChr08G002030
描述	uncharacterized SmilChr08G002030
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18088164 - 18093575 / `-`

ID 对照

NCBI Gene ID	`LOC131001536`
GeneID	`131001536`
locus_tag	`-`
NCBI Name	`LOC131001536`
原始查询	`SmilChr08G002030`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842892]; symbol=AT1G65810; hit=AT1G65810; species=arabidopsis; confidence=medium
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842892]; symbol=AT1G65810; hit=AT1G65810; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G65810` (AT1G65810) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842892] identity=42.4; qcov=0.988; evalue=0; confidence=medium
Rice	`Os02g0684150` - identity=40.3; qcov=0.971; evalue=1.1e-165; confidence=medium
GO	GO:0004386 (helicase activity)
KEGG	-
Pfam	PF13086 (AAA_11); PF13087 (AAA_12); PF20073 (DUF6469)
InterPro	-
eggNOG	-
NR	GeneID:131001536

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783923.1`
2	Cytoplasm	细胞质	0.40000	`XP_057783923.1`
3	Chromosome	染色体	0.00000	`XP_057783923.1`
4	Centromere	着丝粒	0.00000	`XP_057783923.1`
5	Chromatin	染色质	0.00000	`XP_057783923.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18088597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B72,C11,C69
`Chr8:18088612`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,C8
`Chr8:18089623`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B70,C61
`Chr8:18089779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr8:18089843`	`GA`	`G`	1bp_deletion	frameshift_variant	3	B10,B110,C20
`Chr8:18089843`	`GA`	`G`	1bp_deletion	CDS_variant	3	B10,B110,C20
`Chr8:18090197`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C40,C51,C59
`Chr8:18090231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B80,C48,C8
`Chr8:18090920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C32,C58,C60,C68
`Chr8:18090991`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783923.1

854 aa

427

854

DUF6469

AAA_11

AAA_12

PF20073 DUF6469 14-211 aa PF13086 AAA_11 242-597 aa PF13087 AAA_12 605-802 aa

XP_057783924.1

854 aa

427

854

DUF6469

AAA_11

AAA_12

PF20073 DUF6469 14-211 aa PF13086 AAA_11 242-597 aa PF13087 AAA_12 605-802 aa

XP_057783925.1

854 aa

427

854

DUF6469

AAA_11

AAA_12

PF20073 DUF6469 14-211 aa PF13086 AAA_11 242-597 aa PF13087 AAA_12 605-802 aa

XP_057783926.1

854 aa

427

854

DUF6469

AAA_11

AAA_12

PF20073 DUF6469 14-211 aa PF13086 AAA_11 242-597 aa PF13087 AAA_12 605-802 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783923.1`	Pfam	`PF20073`	DUF6469	Domain	14	211	5.6e-36	124.7	Domain of unknown function (DUF6469)
`XP_057783923.1`	Pfam	`PF13086`	AAA_11	Domain	242	597	1.7e-35	123.7	AAA domain
`XP_057783923.1`	Pfam	`PF13087`	AAA_12	Domain	605	802	4e-61	206.7	AAA domain
`XP_057783924.1`	Pfam	`PF20073`	DUF6469	Domain	14	211	5.6e-36	124.7	Domain of unknown function (DUF6469)
`XP_057783924.1`	Pfam	`PF13086`	AAA_11	Domain	242	597	1.7e-35	123.7	AAA domain
`XP_057783924.1`	Pfam	`PF13087`	AAA_12	Domain	605	802	4e-61	206.7	AAA domain
`XP_057783925.1`	Pfam	`PF20073`	DUF6469	Domain	14	211	5.6e-36	124.7	Domain of unknown function (DUF6469)
`XP_057783925.1`	Pfam	`PF13086`	AAA_11	Domain	242	597	1.7e-35	123.7	AAA domain
`XP_057783925.1`	Pfam	`PF13087`	AAA_12	Domain	605	802	4e-61	206.7	AAA domain
`XP_057783926.1`	Pfam	`PF20073`	DUF6469	Domain	14	211	5.6e-36	124.7	Domain of unknown function (DUF6469)
`XP_057783926.1`	Pfam	`PF13086`	AAA_11	Domain	242	597	1.7e-35	123.7	AAA domain
`XP_057783926.1`	Pfam	`PF13087`	AAA_12	Domain	605	802	4e-61	206.7	AAA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057927940.1
TTTTACAATCTTCCTTTGTAAGTCAAGCTTAAGCTTTTCTTCGCTCAATCCTCTCACCTGCTCTCTCCCTACTCTCGTTCCAACAAAACCAAAGAAAATCAAGTGCAAAGCTCCATTTAGTATGCAGCAGCAGATTCAACACCAGCAACAAATTGATTCCAGCCATCACAAATCAATAATACAACAAAATTTGTTTCTAAAGGAAGCTCAACAATAGAAGGGGAAGATCATGGGCTCGATGATTAAGAAGAAAGGAGAGA...

XM_057927941.1
TTTTACAATCTTCCTTTGTAAGTCAAGCTTAAGCTTTTCTTCGCTCAATCCTCTCACCTGCTCTCTCCCTACTCTCGTTCCAACAAAACCAAAGAAAATCAAGTGCAAAGCTCCATTTAGTATGCAGCAGCAGATTCAACACCAGCAACAAATTGATTCCAGCCATCACAAATCAATAATACAACAAAATTTGTTTCTAAAGAGAATGAGTTGATCGGATGGAGTAGATTAAAAGTCCCAATGTAACAGTGACCATCTCT...

CDS

4 records

下载 CDS FASTA

LOC131001536
ATGGGCTCGATGATTAAGAAGAAAGGAGAGAGAACTCCACAGTTAACTGATTTCATATTTTCTTGGTCCATTGCTGACATAATGAACAAAGATCTTTACAAGGACAAGGTTGATAAAATTCCAAAGATCTTTTCATCTGTGGATCATTACTTGAAGTCATTTACAATCCCTCTCATTGTAGAAACGCATGCTGATCTGCTGTCAAATATGACAGCGTTGCACTCTGCTCCATGTTGCGAGGTCTTCAACGTCAAGAAAAG...

Protein

4 records

下载 Protein FASTA

XP_057783923.1
MGSMIKKKGERTPQLTDFIFSWSIADIMNKDLYKDKVDKIPKIFSSVDHYLKSFTIPLIVETHADLLSNMTALHSAPCCEVFNVKKRKAVRLDDDILVNTFTFKAALKGEKDSPKSYEPQFADLVALTDVRPKCVSDLDSPKAPFNLAIVKRASDTKIRILSSKPVLFENGQRGDRLFIVYLTNLNTNIRIWGALHPHKGVNTSIFTSVLTVSPSNCGVCPFKRGESRKMANSREIITSFGLDDSQKAAVSNCIALTECS...

XP_057783924.1
MGSMIKKKGERTPQLTDFIFSWSIADIMNKDLYKDKVDKIPKIFSSVDHYLKSFTIPLIVETHADLLSNMTALHSAPCCEVFNVKKRKAVRLDDDILVNTFTFKAALKGEKDSPKSYEPQFADLVALTDVRPKCVSDLDSPKAPFNLAIVKRASDTKIRILSSKPVLFENGQRGDRLFIVYLTNLNTNIRIWGALHPHKGVNTSIFTSVLTVSPSNCGVCPFKRGESRKMANSREIITSFGLDDSQKAAVSNCIALTECS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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