Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002053`

染色体: Chr08 坐标: 18376140-18400064 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002053`
名称	SmilChr08G002053
描述	uncharacterized SmilChr08G002053
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18376140 - 18400064 / `-`

ID 对照

NCBI Gene ID	`LOC131001527`
GeneID	`131001527`
locus_tag	`-`
NCBI Name	`LOC131001527`
原始查询	`SmilChr08G002053`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816303]; symbol=AT2G17930; hit=AT2G17930; species=arabidopsis; confidence=high
产物	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816303]; symbol=AT2G17930; hit=AT2G17930; species=arabidopsis; confidence=high
Arabidopsis	`AT2G17930` (AT2G17930) Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816303] identity=79.7; qcov=1; evalue=0; confidence=high
Rice	`Os07g0645100` - identity=77.5; qcov=0.217; evalue=0; confidence=weak
GO	GO:0000124 (SAGA complex); GO:0003712 (transcription coregulator activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006281 (DNA repair); GO:0006355 (regulation of DNA-templated transcription); GO:0035267 (NuA4 histone acetyltransferase complex)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00454 (PI3_PI4_kinase); PF02259 (FAT); PF02260 (FATC); PF20175 (Tra1_central); PF20206 (Tra1_ring)
InterPro	-
eggNOG	-
NR	GeneID:131001527

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057783912.1`
2	Cytosol	细胞质基质	0.80000	`XP_057783912.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057783912.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057783912.1`
5	Nucleus	细胞核	0.00000	`XP_057783912.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18377031`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C46,C82
`Chr8:18377094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr8:18377127`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B128,B129,C41,C8,D7
`Chr8:18378500`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B7,B80,C48
`Chr8:18379230`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B51,C35
`Chr8:18379233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr8:18379752`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr8:18379901`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B137,B2
`Chr8:18380012`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr8:18380310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr8:18380499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B108,B71,C80
`Chr8:18380541`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,C46,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783912.1

3905 aa

1952

3905

Tra1_central

Tra1_ring

FAT

PI3_PI4_kinase

FATC

PF20175 Tra1_central 268-836 aa PF20206 Tra1_ring 848-2674 aa PF02259 FAT 2819-3157 aa PF00454 PI3_PI4_kinase 3572-3818 aa PF02260 FATC 3874-3905 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783912.1`	Pfam	`PF20175`	Tra1_central	Repeat	268	836	7.3e-154	514.4	Tra1 HEAT repeat central region
`XP_057783912.1`	Pfam	`PF20206`	Tra1_ring	Repeat	848	2674	0	1462.6	Tra1 HEAT repeat ring region
`XP_057783912.1`	Pfam	`PF02259`	FAT	Repeat	2819	3157	5.7e-43	148.2	FAT domain
`XP_057783912.1`	Pfam	`PF00454`	PI3_PI4_kinase	Family	3572	3818	3.6e-26	93.3	Phosphatidylinositol 3- and 4-kinase
`XP_057783912.1`	Pfam	`PF02260`	FATC	Family	3874	3905	3.3e-07	30.6	FATC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927929.1
GCGTATAAACTGGCGGAGCCGTTCTACATTGCAAAGGCTTCCTCTGTGAGGGGGGAAAATACACTTGTGCGCAACGCTCCCCTTGTTTGATGTGATCACTAACTGAAAAACCCCCATTCCTCACCTCACTGCTTCTTCCCCAAATCAAAACCCTAGATTTCTCAATTAACCCACCTAATCAACAATTTCTCTGAAAAAGGCTCTTTAATCCCGACGCTACCACCATCACATGTACATCTCCTTCCCCCATGTTCGACGTT...

CDS

1 records

下载 CDS FASTA

LOC131001527
ATGAGCCCGGTTCAGAATTTCGAGCAGCACTCGCGGCACCTAATCGAACCCGACCTTCCAATTCAGACTAGGCTGCAAATGGCGATGGAGGTAAGGGACAGTTTGGAAATTTGCCATACAGGGGAGTATTTGAACTTCTTGAGGTGCTATTTCCGTGCGTTTTCGACAATTTTACATCAAACTACCAAGCCCCAGTTTGTTGACAACCAGGAGCACAAGCTTCGCAACATTATAATTGAGATTCTTAATCGCCTGCCCCA...

Protein

1 records

下载 Protein FASTA

XP_057783912.1
MSPVQNFEQHSRHLIEPDLPIQTRLQMAMEVRDSLEICHTGEYLNFLRCYFRAFSTILHQTTKPQFVDNQEHKLRNIIIEILNRLPHSEVLRPFVQELLKVAMHVLTTDNEENGLICIRIIFDLLRNFRPSLETEVQPFLDFVCKIYQNFRATVSYFFENGAMMAPPPPLPSTSGSMGSSLSGDDVKAMEVTDQVGPSGSYVGVSGQLNPSTRSFKVVTESPLVVMFLFQLYGRLVQTNIPHLLPLMVAAISVPGPEKVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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