Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002059`

染色体: Chr08 坐标: 18454572-18459127 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002059`
名称	SmilChr08G002059
描述	transcription initiation factor TFIID subunit 15b
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18454572 - 18459127 / `-`

ID 对照

NCBI Gene ID	`LOC131001635`
GeneID	`131001635`
locus_tag	`-`
NCBI Name	`LOC131001635`
原始查询	`SmilChr08G002059`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription initiation factor TFIID subunit 15b
产物	transcription initiation factor TFIID subunit 15b
Arabidopsis	`AT2G17975` (AT2G17975) zinc finger (Ran-binding) family protein [Source:NCBI gene (formerly Entrezgene);Acc:816309] identity=47; qcov=0.649; evalue=1.23e-50; confidence=medium
Rice	`Os04g0110600` (SRZ4) - identity=47.6; qcov=0.723; evalue=1.56e-51; confidence=high
GO	GO:0003712 (transcription coregulator activity); GO:0003729 (mRNA binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00641 (Zn_ribbon_RanBP)
InterPro	-
eggNOG	-
NR	GeneID:131001635

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784164.1`
2	Cytoplasm	细胞质	1.00000	`XP_057784166.1`
3	Nucleoplasm	核质	0.60000	`XP_057784165.1`
4	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057784164.1`
5	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.60000	`XP_057784164.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18455678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B29,B33
`Chr8:18457558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,A25,C27,C70
`Chr8:18457632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr8:18457714`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B41,B48,B82,C48
`Chr8:18457769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr8:18458829`	`G`	`A`	EMS_canonical_SNV	stop_gained	26	A16,B112,B126,B14,B16,B33,B42,B43,B49,B65,B73,B76,B89,B93,B98,C13,C2,C22,C29,C32,C42,C43,C47,C58,C68,D7
`Chr8:18458993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784164.1

347 aa

174

347

Zn_ribbon_RanBP

PF00641 Zn_ribbon_RanBP 11-38 aa PF00641 Zn_ribbon_RanBP 54-82 aa PF00641 Zn_ribbon_RanBP 182-209 aa PF00641 Zn_ribbon_RanBP 310-337 aa

XP_057784165.1

322 aa

161

322

Zn_ribbon_RanBP

PF00641 Zn_ribbon_RanBP 11-38 aa PF00641 Zn_ribbon_RanBP 54-82 aa PF00641 Zn_ribbon_RanBP 182-209 aa

XP_057784166.1

285 aa

142

285

Zn_ribbon_RanBP

PF00641 Zn_ribbon_RanBP 120-147 aa PF00641 Zn_ribbon_RanBP 248-275 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784164.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	11	38	2.7e-22	78.4	Zn-finger in Ran binding protein and others
`XP_057784164.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	54	82	2.7e-22	78.4	Zn-finger in Ran binding protein and others
`XP_057784164.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	182	209	2.7e-22	78.4	Zn-finger in Ran binding protein and others
`XP_057784164.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	310	337	2.7e-22	78.4	Zn-finger in Ran binding protein and others
`XP_057784165.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	11	38	7.4e-16	57.8	Zn-finger in Ran binding protein and others
`XP_057784165.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	54	82	7.4e-16	57.8	Zn-finger in Ran binding protein and others
`XP_057784165.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	182	209	7.4e-16	57.8	Zn-finger in Ran binding protein and others
`XP_057784166.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	120	147	1.8e-10	40.6	Zn-finger in Ran binding protein and others
`XP_057784166.1`	Pfam	`PF00641`	Zn_ribbon_RanBP	Domain	248	275	1.8e-10	40.6	Zn-finger in Ran binding protein and others

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009093975.1
ACACCTGAAGATCCGTAGCGAAGCGATTTGAGATTTTTCCCAAATTTAAAGCGAAGCATTTGCCGCAGCTTCCAACCGTGAGCTAGTGCCGGAAAATTAACGTACAGAAACAAAGATATGGTAGGCGGCGGAGCTGGCGGCGGCGGGAAAGAAGGCGACTGGGAGTGCGGAGGATGCCACAATCGGAACTATGCCTTCCGATCCTTCTGCAATCGTTGCAAGCAGCCGCGGCTTCTCGTCGACACCAAAACCCCTGCCGA...

XR_009093974.1
ACACCTGAAGATCCGTAGCGAAGCGATTTGAGATTTTTCCCAAATTTAAAGCGAAGCATTTGCCGCAGCTTCCAACCGTGAGCTAGTGCCGGAAAATTAACGTACAGAAACAAAGATATGGTAGGCGGCGGAGCTGGCGGCGGCGGGAAAGAAGGCGACTGGGAGTGCGGAGGATGCCACAATCGGAACTATGCCTTCCGATCCTTCTGCAATCGTTGCAAGCAGCCGCGGCTTCTCGTCGACACCAAAACCCCTGCCGA...

CDS

3 records

下载 CDS FASTA

LOC131001635
ATGGTAGGCGGCGGAGCTGGCGGCGGCGGGAAAGAAGGCGACTGGGAGTGCGGAGGATGCCACAATCGGAACTATGCCTTCCGATCCTTCTGCAATCGTTGCAAGCAGCCGCGGCTTCTCGTCGACACCAAAACCCCTGCCGACTCCAAGTGGCTTCCTCGGATTGGCGATTGGATCTGCACCGGTTGCACTAACAACAATTATGCATCAAGAGAAAAGTGCAAAAAGTGTGGCCAACCTAAGGAGCTAGCAGCAATGCC...

LOC131001635
ATGCCACAATCGGAACTATGCCTTCCGATCCTTCTGCAATCGTTGCAAGCAGCCGCGGCTTCTCGTCGACACCAAAACCCCTGCCGACTCCAAGTGGCTTCCTCGGATTGGCGATTGGATCTGCACCGGGCCCGAGGAGGAATGGAACAAATGTTGAATGTTGGATCTCTCCATCCATCAATCTCTTTGAGCTCTGGTTGGTCTGTTGGAGGGACCAGTCAATATGGAAACCAGCCTAGTGATCCTTATGGACTTCAGTC...

Protein

3 records

下载 Protein FASTA

XP_057784164.1
MVGGGAGGGGKEGDWECGGCHNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKELAAMPAVAIPGASVPTHPTYFARARGGMEQMLNVGSLHPSISLSSGWSVGGTSQYGNQPSDPYGLQSASNWPLGGGSISGLSYSSQSNQLSPAPNGNGWRSGDWMCTCGFHNYSSRLQCKKCNAPAPISAPASLVSPVTALGTKRLASEEFVHNFDNKRLNAGQAYGLQQPNSGLESF...

XP_057784165.1
MVGGGAGGGGKEGDWECGGCHNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKELAAMPAVAIPGASVPTHPTYFARARGGMEQMLNVGSLHPSISLSSGWSVGGTSQYGNQPSDPYGLQSASNWPLGGGSISGLSYSSQSNQLSPAPNGNGWRSGDWMCTCGFHNYSSRLQCKKCNAPAPISAPASLVSPVTALGTKRLASEEFVHNFDNKRLNAGQAYGLQQPNSGLESF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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