Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002078`

染色体: Chr08 坐标: 18678957-18683003 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002078`
名称	SmilChr08G002078
描述	pre-mRNA splicing factor SR-like 1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18678957 - 18683003 / `-`

ID 对照

NCBI Gene ID	`LOC131001602`
GeneID	`131001602`
locus_tag	`-`
NCBI Name	`LOC131001602`
原始查询	`SmilChr08G002078`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pre-mRNA splicing factor SR-like 1
产物	pre-mRNA splicing factor SR-like 1
Arabidopsis	`AT5G37370` (ATSRL1) PRP38 family protein [Source:NCBI gene (formerly Entrezgene);Acc:833711] identity=78.6; qcov=1; evalue=6.68e-73; confidence=high
Rice	`Os05g0178900` - identity=82.3; qcov=0.984; evalue=3.31e-73; confidence=high
GO	GO:0071011 (precatalytic spliceosome)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF03371 (PRP38)
InterPro	-
eggNOG	-
NR	GeneID:131001602

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784095.1`
2	Cytoplasm	细胞质	1.00000	`XP_057784100.1`
3	Nuclear speckle	核斑点	0.80000	`XP_057784095.1`
4	Nucleoplasm	核质	0.80000	`XP_057784099.1`
5	Cytosol	细胞质基质	0.40000	`XP_057784100.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18679502`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr8:18679836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B76,C21,C36
`Chr8:18679955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr8:18680683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B138,C35
`Chr8:18680694`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr8:18681679`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784095.1

409 aa

204

409

PRP38

PF03371 PRP38 13-160 aa

XP_057784096.1

409 aa

204

409

PRP38

PF03371 PRP38 13-160 aa

XP_057784097.1

409 aa

204

409

PRP38

PF03371 PRP38 13-160 aa

XP_057784098.1

409 aa

204

409

PRP38

PF03371 PRP38 13-160 aa

XP_057784099.1

306 aa

153

306

PRP38

PF03371 PRP38 6-57 aa

XP_057784100.1

126 aa

126

PRP38

PF03371 PRP38 13-124 aa

XP_057784101.1

126 aa

126

PRP38

PF03371 PRP38 13-124 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784095.1`	Pfam	`PF03371`	PRP38	Family	13	160	2.1e-47	161.9	PRP38 family
`XP_057784096.1`	Pfam	`PF03371`	PRP38	Family	13	160	2.1e-47	161.9	PRP38 family
`XP_057784097.1`	Pfam	`PF03371`	PRP38	Family	13	160	2.1e-47	161.9	PRP38 family
`XP_057784098.1`	Pfam	`PF03371`	PRP38	Family	13	160	2.1e-47	161.9	PRP38 family
`XP_057784099.1`	Pfam	`PF03371`	PRP38	Family	6	57	4.4e-05	24.1	PRP38 family
`XP_057784100.1`	Pfam	`PF03371`	PRP38	Family	13	124	9.8e-39	133.7	PRP38 family
`XP_057784101.1`	Pfam	`PF03371`	PRP38	Family	13	124	9.8e-39	133.7	PRP38 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XR_009093973.1
AACGAGACTCTATATTTATATTTTAAAGCCCCAAACTCATTTCCGCCTAGGGTTCTCTTCCATTTTTTCTCATTTCCATCGCAATTCCTCAGTCCATTTAAGGTGAGGAAAAGGATCCTAGTTTCAGTCTCTATTCCAATAATTTGTAGCAAGGTTTAATTCAATTGAAAGCAAAAAATTTCAGCGAGTCTTTCGGATCCGGCGATCCATAATGTCTGAGATAAAGTCATCTGGGAGACCATTTGATCAATTATTGGAGA...

XM_057928114.1
GGGATGATGTTTATATAACGTATGAATAGTGGGTTGCTTTGGCGGTCCAACGAGACTCTATATTTATATTTTAAAGCCCCAAACTCATTTCCGCCTAGGGTTCTCTTCCATTTTTTCTCATTTCCATCGCAATTCCTCAGTCCATTTAAGGATCCGGCGATCCATAATGTCTGAGATAAAGTCATCTGGGAGACCATTTGATCAATTATTGGAGAAAGTGTTGTGCATGAATATACTTTCTTCTGATTATTTTCGAGACC...

CDS

7 records

下载 CDS FASTA

LOC131001602
ATGTCTGAGATAAAGTCATCTGGGAGACCATTTGATCAATTATTGGAGAAAGTGTTGTGCATGAATATACTTTCTTCTGATTATTTTCGAGACCTGTTGAAATTGAAAACTTATCATGAAGTTATTGATGAGATTTATGTTACTGTCACGCACGTGGAGCCATGGATGACTGGCAACTGCCGAGGGCCTTCTACCGCATTCTGCCTTCTCTACAAATTCTTTCTTATGAAGCTCACTGTCAAACAAATGCATGGATTATT...

Protein

7 records

下载 Protein FASTA

XP_057784095.1
MSEIKSSGRPFDQLLEKVLCMNILSSDYFRDLLKLKTYHEVIDEIYVTVTHVEPWMTGNCRGPSTAFCLLYKFFLMKLTVKQMHGLLTHPDSPYIRAIGFLYLRYVADPKTLWGWCEPYVKDDEEFSPGCNGRMTTMGAYVRDLLLGQYYFDTLLPRIPVLVLRTVVANLENMNLPSKHCGVTGETTRGSEETARRPPSVKAALSVSFGQRAPHRTLTRDSSPVRRTVNHSYDRGNESRRSPNHPGSQSGDLSDRDYPGR...

XP_057784096.1
MSEIKSSGRPFDQLLEKVLCMNILSSDYFRDLLKLKTYHEVIDEIYVTVTHVEPWMTGNCRGPSTAFCLLYKFFLMKLTVKQMHGLLTHPDSPYIRAIGFLYLRYVADPKTLWGWCEPYVKDDEEFSPGCNGRMTTMGAYVRDLLLGQYYFDTLLPRIPVLVLRTVVANLENMNLPSKHCGVTGETTRGSEETARRPPSVKAALSVSFGQRAPHRTLTRDSSPVRRTVNHSYDRGNESRRSPNHPGSQSGDLSDRDYPGR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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