Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002080`

染色体: Chr08 坐标: 18695230-18698764 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002080`
名称	SmilChr08G002080
描述	cytochrome c oxidase assembly protein COX11, mitochondrial
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18695230 - 18698764 / `-`

ID 对照

NCBI Gene ID	`LOC131001638`
GeneID	`131001638`
locus_tag	`-`
NCBI Name	`LOC131001638`
原始查询	`SmilChr08G002080`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytochrome c oxidase assembly protein COX11, mitochondrial
产物	cytochrome c oxidase assembly protein COX11%2C mitochondrial
Arabidopsis	`AT1G02410` (AT1G02410) cytochrome c oxidase assembly protein CtaG / Cox11 family [Source:NCBI gene (formerly Entrezgene);Acc:839364] identity=86.3; qcov=0.691; evalue=1.6e-124; confidence=high
Rice	`Os03g0718600` - identity=83; qcov=0.662; evalue=1.29e-117; confidence=high
GO	GO:0005507 (copper ion binding); GO:0005743 (mitochondrial inner membrane)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF04442 (CtaG_Cox11)
InterPro	-
eggNOG	-
NR	GeneID:131001638

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057784170.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057784170.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057784170.1`
4	Nucleus	细胞核	0.00000	`XP_057784170.1`
5	Chromosome	染色体	0.00000	`XP_057784170.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18697280`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B72,C11,C69
`Chr8:18697521`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,B29,B33
`Chr8:18697536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,B29,B33,C63,C67
`Chr8:18698366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,C25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784170.1

321 aa

160

321

CtaG_Cox11

PF04442 CtaG_Cox11 162-316 aa

XP_057784171.1

275 aa

138

275

CtaG_Cox11

PF04442 CtaG_Cox11 116-270 aa

XP_057784172.1

275 aa

138

275

CtaG_Cox11

PF04442 CtaG_Cox11 116-270 aa

XP_057784173.1

275 aa

138

275

CtaG_Cox11

PF04442 CtaG_Cox11 116-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784170.1`	Pfam	`PF04442`	CtaG_Cox11	Family	162	316	7.1e-61	205.4	Cytochrome c oxidase assembly protein CtaG/Cox11
`XP_057784171.1`	Pfam	`PF04442`	CtaG_Cox11	Family	116	270	4.8e-61	205.9	Cytochrome c oxidase assembly protein CtaG/Cox11
`XP_057784172.1`	Pfam	`PF04442`	CtaG_Cox11	Family	116	270	4.8e-61	205.9	Cytochrome c oxidase assembly protein CtaG/Cox11
`XP_057784173.1`	Pfam	`PF04442`	CtaG_Cox11	Family	116	270	4.8e-61	205.9	Cytochrome c oxidase assembly protein CtaG/Cox11

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057928188.1
GAAAAATAAAACAATTAACTCTAAGCCCAAAATAAATTAAGTCAACAATTAATTTCAAGCCCAAAATTACAGTGAAAGGCGGCGCCGCTCTTCTTCTTGACGCTCATTTCTCATAACCGCCCCGCCAGCTTCTTCTTCACAGATTTCTCCTCCAAGGCTCTTCTTCATTACGATGCTGCTGAATGAATTTCATCTGATATTGTAGCAGGACTGTCAGCTCTTGCTCAACATGTCATTTTCTCGGCTTTCTAGAGGAACCC...

XM_057928189.1
ATTAATTTCAAGCCCAAAATTACAGTGAAAGGCGGCGCCGCTCTTCTTCTTGACGCTCATTTCTCATAACCGCCCCGCCAGCTTCTTCTTCACAGATTTCTCCTCCAAGGCTCTTCTTCATTACGCAGGACTGTCAGCTCTTGCTCAACATGTCATTTTCTCGGCTTTCTAGAGGAACCCATTTCTTGTCTTGTGCTAAAGTCTCTATTTGTCAGGCTCCATTCTTTTCCAGGCACCTTGATGCTGTGGGCTCAAGATAC...

CDS

4 records

下载 CDS FASTA

LOC131001638
ATGCGAATTACTGTTCAAAACCTGACGAAAAAACGCACAAAGGGGATGCGATATGCATTACCATTGGAGCAAATTGCTTACTGCATTTTGAGATTTCCAGTACCGTTGAAATTGCAGGACTGTCAGCTCTTGCTCAACATGTCATTTTCTCGGCTTTCTAGAGGAACCCATTTCTTGTCTTGTGCTAAAGTCTCTATTTGTCAGGCTCCATTCTTTTCCAGGCACCTTGATGCTGTGGGCTCAAGATACAGTTCTTATAT...

LOC131001638
ATGTCATTTTCTCGGCTTTCTAGAGGAACCCATTTCTTGTCTTGTGCTAAAGTCTCTATTTGTCAGGCTCCATTCTTTTCCAGGCACCTTGATGCTGTGGGCTCAAGATACAGTTCTTATATTGGAGCAAGTAATAGCACTGTCTACGGGAGACCATTTGGATTTAATCGTGAGTGTTTTACGTCGAAGCATGGATACAATTTGAGAATTTACAGTGCAGAGAAGTCGCATCCTATCAAATTTGGCCGGCAATATTCTAC...

Protein

4 records

下载 Protein FASTA

XP_057784170.1
MRITVQNLTKKRTKGMRYALPLEQIAYCILRFPVPLKLQDCQLLLNMSFSRLSRGTHFLSCAKVSICQAPFFSRHLDAVGSRYSSYIGASNSTVYGRPFGFNRECFTSKHGYNLRIYSAEKSHPIKFGRQYSTHAATERKSKKMLFYLTGLVFAMVGCSYAAVPLYRRFCQATGYGGTVQRRESVEEKIARHTKDGTVTSREIVVQFNADVADGMPWKFVPTQREVRVKPGESALAFYTAENKSATPITGVSTYNVTPMK...

XP_057784171.1
MSFSRLSRGTHFLSCAKVSICQAPFFSRHLDAVGSRYSSYIGASNSTVYGRPFGFNRECFTSKHGYNLRIYSAEKSHPIKFGRQYSTHAATERKSKKMLFYLTGLVFAMVGCSYAAVPLYRRFCQATGYGGTVQRRESVEEKIARHTKDGTVTSREIVVQFNADVADGMPWKFVPTQREVRVKPGESALAFYTAENKSATPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLIPGEQIDMPVFFYIDPEFETDPKMDGIN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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