当前解析结果
SmilChr08G002092| 统一新 Gene ID | SmilChr08G002092 |
|---|---|
| 名称 | SmilChr08G002092 |
| 描述 | MLO-like protein 4 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 18815106 - 18997620 / + |
| NCBI Gene ID | LOC131001564 |
|---|---|
| GeneID | 131001564 |
| locus_tag | - |
| NCBI Name | LOC131001564 |
| 原始查询 | SmilChr08G002092 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MLO-like protein 4 |
| 产物 | MLO-like protein 4 |
| Arabidopsis | AT1G11000 (MLO4)Seven transmembrane MLO family protein [Source:NCBI gene (formerly Entrezgene);Acc:837643] identity=48.4; qcov=0.918; evalue=4.65e-153; confidence=high |
| Rice | Os11g0181400 (OsMLO11)- identity=47.1; qcov=0.994; evalue=5.07e-170; confidence=high |
| GO | GO:0006952 (defense response); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF03094 (Mlo) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001564 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057784014.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057784014.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057784014.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057784014.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784014.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:18816921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B72,C11,C69 |
Chr8:18816931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr8:18816968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:18817106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,C65 |
Chr8:18817338 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr8:18817894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr8:18818237 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,B77,C19 |
Chr8:18818274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr8:18819509 |
C |
T |
EMS_canonical_SNV | stop_gained | 37 | A9,B10,B104,B105,B110,B111,B118,B126,B128,B139,B22,B4,B53,B54,B68,B97,B99,C1,C10,C12,C17,C20,C25,C36,C38,C40,C42,C55,C58,C63,C67,C73,C82,C83,C87,D10,D6 |
Chr8:18820533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr8:18820570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr8:18820587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,A7,B135,B40,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784014.1PF03094
Mlo 6-313 aa
PF03094
Mlo 317-494 aa
XP_057784015.1PF03094
Mlo 6-313 aa
PF03094
Mlo 317-494 aa
XP_057784016.1PF03094
Mlo 6-473 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784014.1 |
Pfam | PF03094 |
Mlo | Family | 6 | 313 | 2.3e-153 | 511.8 | Mlo family |
XP_057784014.1 |
Pfam | PF03094 |
Mlo | Family | 317 | 494 | 2.3e-153 | 511.8 | Mlo family |
XP_057784015.1 |
Pfam | PF03094 |
Mlo | Family | 6 | 313 | 2.3e-153 | 511.8 | Mlo family |
XP_057784015.1 |
Pfam | PF03094 |
Mlo | Family | 317 | 494 | 2.3e-153 | 511.8 | Mlo family |
XP_057784016.1 |
Pfam | PF03094 |
Mlo | Family | 6 | 473 | 6.1e-161 | 536.8 | Mlo family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。