Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002092

染色体: Chr08 坐标: 18815106-18997620 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002092
名称SmilChr08G002092
描述MLO-like protein 4
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向18815106 - 18997620 / +

ID 对照

NCBI Gene IDLOC131001564
GeneID131001564
locus_tag-
NCBI NameLOC131001564
原始查询SmilChr08G002092

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述MLO-like protein 4
产物MLO-like protein 4
ArabidopsisAT1G11000 (MLO4)
Seven transmembrane MLO family protein [Source:NCBI gene (formerly Entrezgene);Acc:837643]
identity=48.4; qcov=0.918; evalue=4.65e-153; confidence=high
RiceOs11g0181400 (OsMLO11)
-
identity=47.1; qcov=0.994; evalue=5.07e-170; confidence=high
GOGO:0006952 (defense response); GO:0016020 (membrane)
KEGG-
PfamPF03094 (Mlo)
InterPro-
eggNOG-
NRGeneID:131001564

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057784014.1
2 Vacuole 液泡 0.20000 XP_057784014.1
3 Vacuole membrane 液泡膜 0.20000 XP_057784014.1
4 Nucleus 细胞核 0.00000 XP_057784014.1
5 Chromosome 染色体 0.00000 XP_057784014.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:18816921 C T EMS_canonical_SNV CDS_variant 3 B72,C11,C69
Chr8:18816931 G A EMS_canonical_SNV CDS_variant 1 C14
Chr8:18816968 C T EMS_canonical_SNV CDS_variant 1 D10
Chr8:18817106 C T EMS_canonical_SNV CDS_variant 2 B123,C65
Chr8:18817338 C T EMS_canonical_SNV CDS_variant 1 B71
Chr8:18817894 G A EMS_canonical_SNV CDS_variant 1 C40
Chr8:18818237 C T EMS_canonical_SNV CDS_variant 3 B131,B77,C19
Chr8:18818274 G A EMS_canonical_SNV CDS_variant 1 C35
Chr8:18819509 C T EMS_canonical_SNV stop_gained 37 A9,B10,B104,B105,B110,B111,B118,B126,B128,B139,B22,B4,B53,B54,B68,B97,B99,C1,C10,C12,C17,C20,C25,C36,C38,C40,C42,C55,C58,C63,C67,C73,C82,C83,C87,D10,D6
Chr8:18820533 G A EMS_canonical_SNV CDS_variant 1 C46
Chr8:18820570 G A EMS_canonical_SNV CDS_variant 1 B78
Chr8:18820587 C T EMS_canonical_SNV CDS_variant 5 A10,A7,B135,B40,C33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057784014.1
557 aa
N
1
278
557
Mlo
Mlo
C
PF03094 Mlo 6-313 aa PF03094 Mlo 317-494 aa
XP_057784015.1
557 aa
N
1
278
557
Mlo
Mlo
C
PF03094 Mlo 6-313 aa PF03094 Mlo 317-494 aa
XP_057784016.1
536 aa
N
1
268
536
Mlo
C
PF03094 Mlo 6-473 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784014.1 Pfam PF03094 Mlo Family 6 313 2.3e-153 511.8 Mlo family
XP_057784014.1 Pfam PF03094 Mlo Family 317 494 2.3e-153 511.8 Mlo family
XP_057784015.1 Pfam PF03094 Mlo Family 6 313 2.3e-153 511.8 Mlo family
XP_057784015.1 Pfam PF03094 Mlo Family 317 494 2.3e-153 511.8 Mlo family
XP_057784016.1 Pfam PF03094 Mlo Family 6 473 6.1e-161 536.8 Mlo family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XR_009093970.1
TCAATGCTAGAGCTAATGCATTCAAAGTTCAAACCATCAATTTTCCACATCATGATTCATCCATCTTCATACAATTTCACTGTGCAGATTTTGATTAAATTTGGTGGTAACCAACCTTGATGAGAAAGGGCCCATTTTGCATTGTGCTCCCCTATTTTACAACACTCCATGCAGCCAATTTTGAATGCTGAAGGCGTCATGGCCTCAACTTCGGTGAACCAAGTCGACATAAAAACAAATCAATTATGATTCCATAAATG...
XM_057928032.1
GCCGGCCTGGTCAAGAAATAGATGGAGTCGTGCAGTGTAGCAATAATTTAATGGATAAAAATAATTGTGGCAGATGAATTGATTTCCCACACGTTACAAGAATTTTGATTAAATTTGGTGGTAACCAACCTTGATGAGAAAGGGCCCATTTTGCATTGTGCTCCCCTATTTTACAACACTCCATGCAGCCAATTTTGAATGCTGAAGGCGTCATGGCCTCAACTTCGGTGAACCAAGTCGACATAAAAACAAATCAATTA...

CDS

3 records

下载 CDS FASTA
LOC131001564
ATGAAAAGTAGGGAGGGACGATCTTTGGCAGCGACACCCAGCTGGGCCGTCGCCACCGTTATCTCCCTTTTGGTCATCATTGGCTTCTTGCTTCATGGAGGTTTGAAGAAGTTTGGGAAGTGGTTGGATAGGACTAAAAGGAAGCATCTTCTTGCTGCCCTGGACAAAATCAAAGAAGAGTTGATGGTATTTGGGCTCCTCTCACTGTTGATGGGTCACTGGATTGCTTTTGTGGCCAAAATTTGTGTCAAGCCGTCGGC...
LOC131001564
ATGAAAAGTAGGGAGGGACGATCTTTGGCAGCGACACCCAGCTGGGCCGTCGCCACCGTTATCTCCCTTTTGGTCATCATTGGCTTCTTGCTTCATGGAGGTTTGAAGAAGTTTGGGAAGTGGTTGGATAGGACTAAAAGGAAGCATCTTCTTGCTGCCCTGGACAAAATCAAAGAAGAGTTGATGGTATTTGGGCTCCTCTCACTGTTGATGGGTCACTGGATTGCTTTTGTGGCCAAAATTTGTGTCAAGCCGTCGGC...

Protein

3 records

下载 Protein FASTA
XP_057784014.1
MKSREGRSLAATPSWAVATVISLLVIIGFLLHGGLKKFGKWLDRTKRKHLLAALDKIKEELMVFGLLSLLMGHWIAFVAKICVKPSALMSSRFYPCSPTKIAENQALARHAVVFSSNHLNSSISRLLLEDPNYDYCPEDREPFASYESLEQLHRFLFVLGVTHVSYSFLAIALAMIKIYSWRTWENHAKTLALRGLLTVDTSAESEDIGTDGVPIRRLSSFVSHHTSHPWSRNRLLVWLLCFSRQFWSSISQADYMALRL...
XP_057784015.1
MKSREGRSLAATPSWAVATVISLLVIIGFLLHGGLKKFGKWLDRTKRKHLLAALDKIKEELMVFGLLSLLMGHWIAFVAKICVKPSALMSSRFYPCSPTKIAENQALARHAVVFSSNHLNSSISRLLLEDPNYDYCPEDREPFASYESLEQLHRFLFVLGVTHVSYSFLAIALAMIKIYSWRTWENHAKTLALRGLLTVDTSAESEDIGTDGVPIRRLSSFVSHHTSHPWSRNRLLVWLLCFSRQFWSSISQADYMALRL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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