Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002132`

染色体: Chr08 坐标: 19224505-19228228 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002132`
名称	SmilChr08G002132
描述	protein PIN-LIKES 7-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19224505 - 19228228 / `+`

ID 对照

NCBI Gene ID	`LOC131001609`
GeneID	`131001609`
locus_tag	`-`
NCBI Name	`LOC131001609`
原始查询	`SmilChr08G002132`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein PIN-LIKES 7-like
产物	protein PIN-LIKES 7-like
Arabidopsis	`AT5G65980` (AT5G65980) Auxin efflux carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:836728] identity=57.6; qcov=1; evalue=3.67e-170; confidence=high
Rice	`Os09g0554300` (OsPILS7a) - identity=52.1; qcov=1.08; evalue=1.69e-154; confidence=high
GO	GO:0016020 (membrane); GO:0080162 (endoplasmic reticulum to cytosol auxin transport)
KEGG	-
Pfam	PF03547 (Mem_trans)
InterPro	-
eggNOG	-
NR	GeneID:131001609

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057784116.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057784116.1`
3	Cell membrane	细胞膜	0.20000	`XP_057784116.1`
4	Vacuole	液泡	0.20000	`XP_057784116.1`
5	Vacuole membrane	液泡膜	0.20000	`XP_057784116.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19226166`	`C`	`T`	EMS_canonical_SNV	stop_gained	32	A11,A24,A6,B111,B114,B123,B127,B14,B17,B21,B31,B41,B54,B57,B85,B86,B90,B92,C10,C11,C2,C29,C39,C43,C61,C65,C69,C7,C74,C82,D5,D6
`Chr8:19226168`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr8:19226208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr8:19226374`	`TC`	`T`	1bp_deletion	frameshift_variant	23	A24,B104,B111,B114,B123,B127,B17,B31,B41,B54,B85,B86,B90,C10,C2,C29,C39,C43,C69,C7,C82,D5,D6
`Chr8:19226381`	`TA`	`T`	1bp_deletion	frameshift_variant	22	A24,B104,B111,B114,B123,B127,B17,B31,B41,B54,B85,B86,B90,C10,C2,C39,C43,C69,C7,C82,D5,D6
`Chr8:19226588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:19226737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:19226743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B53,C21,C36,C42
`Chr8:19226749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B140
`Chr8:19226817`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B140,D7
`Chr8:19226968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,D7
`Chr8:19227045`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784116.1

396 aa

198

396

Mem_trans

PF03547 Mem_trans 10-387 aa

XP_057784117.1

396 aa

198

396

Mem_trans

PF03547 Mem_trans 10-387 aa

XP_057784118.1

396 aa

198

396

Mem_trans

PF03547 Mem_trans 10-387 aa

XP_057784119.1

396 aa

198

396

Mem_trans

PF03547 Mem_trans 10-387 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784116.1`	Pfam	`PF03547`	Mem_trans	Family	10	387	3.4e-78	263.4	Membrane transport protein
`XP_057784117.1`	Pfam	`PF03547`	Mem_trans	Family	10	387	3.4e-78	263.4	Membrane transport protein
`XP_057784118.1`	Pfam	`PF03547`	Mem_trans	Family	10	387	3.4e-78	263.4	Membrane transport protein
`XP_057784119.1`	Pfam	`PF03547`	Mem_trans	Family	10	387	3.4e-78	263.4	Membrane transport protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057928134.1
CATAATGTCGAAAATACAAAATGTCTAAAATCATAGACACATAGGCACACAGTGTAGATAGATCCGAATCGCCCTCCGCTGCTTCTCTCTCTACATATATATTACACCAACTGCTTCAAACCCATTTCTTCACCTCTCTCTCCCTCTCTCGTGTATACAAATACAATATTGCTCTTTTCTTTTCTCTTCGTTTGAAGTGTTTGTCAACAAAGGAATTCTAGCGGGTGACAAAGAGATTGCTCCAAATTTTTTACCAGCAG...

XM_057928133.1
CATAGGCACACAGTGTAGATAGATCCGAATCGCCCTCCGCTGCTTCTCTCTCTACATATATATTACACCAACTGCTTCAAACCCATTTCTTCACCTCTCTCTCCCTCTCTCGTGTATACAAATACAATATTGCTCTTTTCTTTTCTCTTCGTTTGAAGTGTTTGTCAACAAAGGAATTCTAGCGGGTGACAAAGAGATTGCTCCAAATTTTTTACCAGCAGGGCATATTGATAAAGCTGTACGTGGTTGAAAAGAGGAAG...

CDS

4 records

下载 CDS FASTA

LOC131001609
ATGGGGTTCTTGACTCTGTTTGAGGTGGCCTCGATGCCGATTCTGCAGGTGCTTATAATAAGCATGCTTGGAGCTTTCATGGCAACTGATTACCTCAAGCTCCTCCCACCTGATGCCAGAAAGTACATGAACAAAATTGTGTATGTGGCCTTCACTCCATCACTCGTGTTTATAAGCCTCGCAAAGAGTGTCAACTTCCAAGAGATCATCTCATGGTGGTTCATGCCTGTGAACATCGGGTTAACGTTCTTGTTTGGAGC...

Protein

4 records

下载 Protein FASTA

XP_057784116.1
MGFLTLFEVASMPILQVLIISMLGAFMATDYLKLLPPDARKYMNKIVYVAFTPSLVFISLAKSVNFQEIISWWFMPVNIGLTFLFGASFGWIVVKILRPEPHIRNLILAICSAGNLGNILLIIIPAICKENGSPFGDANVCSTIGLSYVSYSMAVGAFYIWTYTFHLIRSAGVIYRASLEAEDPKKQANQDLEANEKSLLLNGAEHAPSQLQTIEVKRSARQVMGILHQVGDELMSPPVVAAILGFIFGAVTWLRDVIIG...

XP_057784117.1
MGFLTLFEVASMPILQVLIISMLGAFMATDYLKLLPPDARKYMNKIVYVAFTPSLVFISLAKSVNFQEIISWWFMPVNIGLTFLFGASFGWIVVKILRPEPHIRNLILAICSAGNLGNILLIIIPAICKENGSPFGDANVCSTIGLSYVSYSMAVGAFYIWTYTFHLIRSAGVIYRASLEAEDPKKQANQDLEANEKSLLLNGAEHAPSQLQTIEVKRSARQVMGILHQVGDELMSPPVVAAILGFIFGAVTWLRDVIIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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