Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002138`

染色体: Chr08 坐标: 19251668-19254807 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002138`
名称	SmilChr08G002138
描述	protein REVEILLE 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19251668 - 19254807 / `-`

ID 对照

NCBI Gene ID	`LOC131001605`
GeneID	`131001605`
locus_tag	`-`
NCBI Name	`LOC131001605`
原始查询	`SmilChr08G002138`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein REVEILLE 2-like
产物	protein REVEILLE 2-like
Arabidopsis	`AT5G17300` (RVE1) Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831595] identity=31.9; qcov=0.862; evalue=2e-11; confidence=low
Rice	`Os04g0583900` (LHY) - identity=34.9; qcov=0.647; evalue=4.33e-06; confidence=low
GO	GO:0003677 (DNA binding)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding)
InterPro	-
eggNOG	-
NR	GeneID:131001605

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784105.1`
2	Nucleoplasm	核质	0.40000	`XP_057784109.1`
3	Nuclear body	核内小体	0.20000	`XP_057784109.1`
4	Chromosome	染色体	0.00000	`XP_057784105.1`
5	Centromere	着丝粒	0.00000	`XP_057784105.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19252011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,B88
`Chr8:19252195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr8:19252218`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:19252644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B88
`Chr8:19252655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,B88
`Chr8:19252776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,B88
`Chr8:19252824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B90,B92
`Chr8:19252858`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr8:19253202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784105.1

409 aa

204

409

Myb_DNA-binding

PF00249 Myb_DNA-binding 51-94 aa

XP_057784106.1

408 aa

204

408

Myb_DNA-binding

PF00249 Myb_DNA-binding 50-93 aa

XP_057784107.1

404 aa

202

404

Myb_DNA-binding

PF00249 Myb_DNA-binding 51-94 aa

XP_057784108.1

403 aa

202

403

Myb_DNA-binding

PF00249 Myb_DNA-binding 50-93 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784105.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	51	94	1e-14	55.0	Myb-like DNA-binding domain
`XP_057784106.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	50	93	1e-14	55.0	Myb-like DNA-binding domain
`XP_057784107.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	51	94	1e-14	55.1	Myb-like DNA-binding domain
`XP_057784108.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	50	93	1e-14	55.1	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057928125.1
GGCGCCTCCTGCCTCCTCTTCTCTTTCCCTTTTCTTTCTCCATCTCCATCTCCCTCTCCACAATCCACAAATCCCACCAAAAATAGTTTCTTCATCCAGATATTTCTTTTCTTTATTTTTTCTCATCTTGAGCTGAAATCTGAACAGAATTTTCTGGGTCTTCTTCGCTTTCTCTAATTTACTCTGCATTTCCATCGTTAATTTCTGATAAAGATCGAAGCTTTGGTGTGTTATATTGCTCATATTTTACTTATTTTCTG...

XM_057928126.1
CCATCTCCATCTCCCTCTCCACAATCCACAAATCCCACCAAAAATAGTTTCTTCATCCAGATATTTCTTTTCTTTATTTTTTCTCATCTTGAGCTGAAATCTGAACAGAATTTTCTGGGTCTTCTTCGCTTTCTCTAATTTACTCTGCATTTCCATCGTTAATTTCTGATAAAGATCGAAGCTTTGGTGTGTTATATTGCTCATATTTTACTTATTTTCTGTTAAATGAACAGTCCCTTTTTTCTGGATTCACATTTTGC...

CDS

6 records

下载 CDS FASTA

LOC131001605
ATGGTTTCTGCAGCCATGGCAGTTCAGGGAAAGCATGCAAGTGCTGCAATGAGTGCGACTGAGGTGTTTCTGCAGTCGAAAGAGCAGTTTTCTAGTGCAGATGAGTACACTCTTAAGGTGAGAAAACCATATATGATTACTAAACAAAGGGAAAGATGGACTGAAGAAGAGCATGAAAGGTTCCTCGAGGCCTTGAAACTTCATGGTCGTGCATGGAGGAAAATTGAAGAGCACGTGGGTACGAAAACAGCAGTACAAAT...

Protein

6 records

下载 Protein FASTA

XP_057784105.1
MVSAAMAVQQGKHASAAMSATEVFLQSKEQFSSADEYTLKVRKPYMITKQRERWTEEEHERFLEALKLHGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVARESSNGDGSNAKLIEIPPPRPKRKPVHPYPRKPGSVVKTRASISEKLTSQDVSEQETQSPTSVLSENHSDTSARADSCTPEGISSPVPSALPLDASASCGTEEPTRSKSVHEDGKCSPNEEVSPVLSQSNLELLSQDDDLAEEDESAVHRLKLFGKTLLV...

XP_057784106.1
MVSAAMAVQGKHASAAMSATEVFLQSKEQFSSADEYTLKVRKPYMITKQRERWTEEEHERFLEALKLHGRAWRKIEEHVGTKTAVQIRSHAQKFFSKVARESSNGDGSNAKLIEIPPPRPKRKPVHPYPRKPGSVVKTRASISEKLTSQDVSEQETQSPTSVLSENHSDTSARADSCTPEGISSPVPSALPLDASASCGTEEPTRSKSVHEDGKCSPNEEVSPVLSQSNLELLSQDDDLAEEDESAVHRLKLFGKTLLVK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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