Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002149

染色体: Chr08 坐标: 19341711-19345721 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002149
名称SmilChr08G002149
描述ultraviolet-B receptor UVR8-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向19341711 - 19345721 / -

ID 对照

NCBI Gene IDLOC131001610
GeneID131001610
locus_tag-
NCBI NameLOC131001610
原始查询SmilChr08G002149

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ultraviolet-B receptor UVR8-like
产物ultraviolet-B receptor UVR8-like
ArabidopsisAT3G02510 (AT3G02510)
Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:821100]
identity=78.5; qcov=0.997; evalue=0; confidence=high
RiceOs08g0430700
-
identity=76.4; qcov=0.977; evalue=0; confidence=high
GO-
KEGG-
PfamPF00415 (RCC1); PF13540 (RCC1_2); PF25390 (WD40_RLD)
InterPro-
eggNOG-
NRGeneID:131001610

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057784120.1
2 Cytosol 细胞质基质 1.00000 XP_057784120.1
3 Nucleus 细胞核 0.60000 XP_057784120.1
4 Nucleoplasm 核质 0.60000 XP_057784120.1
5 Nuclear body 核内小体 0.20000 XP_057784120.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:19342172 C T EMS_canonical_SNV CDS_variant 3 B68,B90,B92
Chr8:19342189 G A EMS_canonical_SNV CDS_variant 1 B113
Chr8:19342195 C T EMS_canonical_SNV CDS_variant 1 D11
Chr8:19342267 G A EMS_canonical_SNV CDS_variant 1 B107
Chr8:19342530 G A EMS_canonical_SNV CDS_variant 1 B12
Chr8:19343610 G A EMS_canonical_SNV CDS_variant 1 B22
Chr8:19344494 C T EMS_canonical_SNV CDS_variant 1 B24
Chr8:19344518 G A EMS_canonical_SNV CDS_variant 1 A8
Chr8:19344530 G A EMS_canonical_SNV CDS_variant 3 B113,B74,C2
Chr8:19345186 G A EMS_canonical_SNV CDS_variant 1 B12
Chr8:19345238 C T EMS_canonical_SNV CDS_variant 1 C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784120.1
391 aa
N
1
196
391
WD40_RLD
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
C
PF25390 WD40_RLD 7-378 aa PF00415 RCC1 9-53 aa PF13540 RCC1_2 40-68 aa PF00415 RCC1 56-106 aa PF13540 RCC1_2 93-122 aa PF00415 RCC1 109-166 aa PF13540 RCC1_2 153-177 aa PF13540 RCC1_2 202-228 aa PF00415 RCC1 215-264 aa PF13540 RCC1_2 252-279 aa PF00415 RCC1 267-317 aa PF13540 RCC1_2 305-332 aa PF00415 RCC1 320-379 aa
XP_057784121.1
391 aa
N
1
196
391
WD40_RLD
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1_2
RCC1
RCC1_2
RCC1
RCC1_2
RCC1
C
PF25390 WD40_RLD 7-378 aa PF00415 RCC1 9-53 aa PF13540 RCC1_2 40-68 aa PF00415 RCC1 56-106 aa PF13540 RCC1_2 93-122 aa PF00415 RCC1 109-166 aa PF13540 RCC1_2 153-177 aa PF13540 RCC1_2 202-228 aa PF00415 RCC1 215-264 aa PF13540 RCC1_2 252-279 aa PF00415 RCC1 267-317 aa PF13540 RCC1_2 305-332 aa PF00415 RCC1 320-379 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784120.1 Pfam PF25390 WD40_RLD Repeat 7 378 2e-92 311.1 RCC1-like domain
XP_057784120.1 Pfam PF00415 RCC1 Repeat 9 53 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF13540 RCC1_2 Repeat 40 68 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF00415 RCC1 Repeat 56 106 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF13540 RCC1_2 Repeat 93 122 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF00415 RCC1 Repeat 109 166 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF13540 RCC1_2 Repeat 153 177 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF13540 RCC1_2 Repeat 202 228 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF00415 RCC1 Repeat 215 264 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF13540 RCC1_2 Repeat 252 279 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF00415 RCC1 Repeat 267 317 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF13540 RCC1_2 Repeat 305 332 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784120.1 Pfam PF00415 RCC1 Repeat 320 379 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF25390 WD40_RLD Repeat 7 378 2e-92 311.1 RCC1-like domain
XP_057784121.1 Pfam PF00415 RCC1 Repeat 9 53 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF13540 RCC1_2 Repeat 40 68 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF00415 RCC1 Repeat 56 106 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF13540 RCC1_2 Repeat 93 122 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF00415 RCC1 Repeat 109 166 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF13540 RCC1_2 Repeat 153 177 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF13540 RCC1_2 Repeat 202 228 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF00415 RCC1 Repeat 215 264 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF13540 RCC1_2 Repeat 252 279 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF00415 RCC1 Repeat 267 317 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF13540 RCC1_2 Repeat 305 332 3.1e-64 212.0 Regulator of chromosome condensation (RCC1) repeat
XP_057784121.1 Pfam PF00415 RCC1 Repeat 320 379 1.1e-83 276.3 Regulator of chromosome condensation (RCC1) repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057928138.1
GAAATCGGATAAGTTGAAATTGAAATATTTTTGAGTAGATAATATATAATGTTTCACATTTCGAGAGTTTTAGCAATAGCAATAGCAATAGCAATAGCAATAGCAGCTAAACAAAAACCCAGAATACAGACATCGCTCACTTGTTTGTCCCTACAAAACAATTCTCCAACATTTCCATTAACATCTTCCCATTATTTTATGCAAAAAAAGCTGGAAACTTTCCAATCAGATTCGCACTAACTTTCTCAATCTATACCGGC...
XM_057928137.1
GAAATCGGATAAGTTGAAATTGAAATATTTTTGAGTAGATAATATATAATGTTTCACATTTCGAGAGTTTTAGCAATAGCAATAGCAATAGCAATAGCAATAGCAGCTAAACAAAAACCCAGAATACAGACATCGCTCACTTGTTTGTCCCTACAAAACAATTCTCCAACATTTCCATTAACATCTTCCCATTATTTTATGCAAAAAAAGCTGGAAACTTTCCAATCAGATTCGCACTAACTTTCTCAATCTATACCGGC...

CDS

2 records

下载 CDS FASTA
LOC131001610
ATGGCCTCCAAAACCGCCGTCGTTGCATGGGGTTCCGGGGAAGACGGCCAGTTAGGAATCGGAAACAATGAAGAGAAAGAATGGGTCTGCACCATCGACGCCCTTAGCTCCGAAAAAATTTGCTCCGTTGTCGCCGGCAGCCGCAATTCCCTCGCTATATGTGAAGACGGCAAGTTGTTTACTTGGGGTTGGAATCAAAGAGGGACCTTGGGGCACCCGCCGGAAACCAAAACTGAGAATGTTCCTAGTCAAGTTAAGGC...
LOC131001610
ATGGCCTCCAAAACCGCCGTCGTTGCATGGGGTTCCGGGGAAGACGGCCAGTTAGGAATCGGAAACAATGAAGAGAAAGAATGGGTCTGCACCATCGACGCCCTTAGCTCCGAAAAAATTTGCTCCGTTGTCGCCGGCAGCCGCAATTCCCTCGCTATATGTGAAGACGGCAAGTTGTTTACTTGGGGTTGGAATCAAAGAGGGACCTTGGGGCACCCGCCGGAAACCAAAACTGAGAATGTTCCTAGTCAAGTTAAGGC...

Protein

2 records

下载 Protein FASTA
XP_057784120.1
MASKTAVVAWGSGEDGQLGIGNNEEKEWVCTIDALSSEKICSVVAGSRNSLAICEDGKLFTWGWNQRGTLGHPPETKTENVPSQVKALANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRPVRRDIVIPQRCVPKLSVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISTPVRVQGLDSVRVIAVGAFHNLALLDDGTVMAWGNNEYGQLGIGDTQPRSQPVAVQGLSDLNLVDIAAGGWH...
XP_057784121.1
MASKTAVVAWGSGEDGQLGIGNNEEKEWVCTIDALSSEKICSVVAGSRNSLAICEDGKLFTWGWNQRGTLGHPPETKTENVPSQVKALANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRPVRRDIVIPQRCVPKLSVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISTPVRVQGLDSVRVIAVGAFHNLALLDDGTVMAWGNNEYGQLGIGDTQPRSQPVAVQGLSDLNLVDIAAGGWH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器