Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002167`

染色体: Chr08 坐标: 19612768-19616677 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002167`
名称	SmilChr08G002167
描述	caffeoylshikimate esterase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19612768 - 19616677 / `+`

ID 对照

NCBI Gene ID	`LOC131001619`
GeneID	`131001619`
locus_tag	`-`
NCBI Name	`LOC131001619`
原始查询	`SmilChr08G002167`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	caffeoylshikimate esterase-like
产物	caffeoylshikimate esterase-like
Arabidopsis	`AT5G16120` (AT5G16120) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831469] identity=65; qcov=1; evalue=1.48e-171; confidence=high
Rice	`Os10g0135600` (OsPOP20) - identity=65.1; qcov=0.971; evalue=8.18e-168; confidence=high
GO	GO:0016020 (membrane); GO:0016298 (lipase activity)
KEGG	smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00561 (Abhydrolase_1); PF00756 (Esterase); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131001619

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057784132.1`
2	Endoplasmic reticulum	内质网	0.40000	`XP_057784132.1`
3	Cytoplasm	细胞质	0.40000	`XP_057784135.1`
4	Lipid droplet	脂滴	0.40000	`XP_057784132.1`
5	Nucleus	细胞核	0.00000	`XP_057784132.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19614691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B72,C26
`Chr8:19614712`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr8:19614787`	`C`	`CT`	1bp_insertion	stop_gained,frameshift_variant	1	C48
`Chr8:19614787`	`C`	`CT`	1bp_insertion	CDS_variant	1	C48
`Chr8:19614799`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B122,B15,C15
`Chr8:19614929`	`G`	`GT`	1bp_insertion	frameshift_variant	11	A1,A14,A25,A9,B21,B5,B59,B93,C19,C24,C77
`Chr8:19615638`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	B2,B55,C23
`Chr8:19615638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B55,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784132.1

374 aa

187

374

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

Esterase

PF12146 Hydrolase_4 113-355 aa PF00561 Abhydrolase_1 117-354 aa PF12697 Abhydrolase_6 121-340 aa PF00756 Esterase 192-231 aa

XP_057784133.1

364 aa

182

364

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 103-345 aa PF00561 Abhydrolase_1 107-344 aa PF12697 Abhydrolase_6 111-330 aa

XP_057784135.1

358 aa

179

358

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 97-339 aa PF00561 Abhydrolase_1 101-338 aa PF12697 Abhydrolase_6 105-324 aa

XP_057784136.1

348 aa

174

348

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

PF12146 Hydrolase_4 87-329 aa PF00561 Abhydrolase_1 91-328 aa PF12697 Abhydrolase_6 95-314 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784132.1`	Pfam	`PF12146`	Hydrolase_4	Domain	113	355	4.7e-65	219.9	Serine aminopeptidase, S33
`XP_057784132.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	117	354	1.6e-14	54.9	alpha/beta hydrolase fold
`XP_057784132.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	121	340	1.9e-10	42.5	Alpha/beta hydrolase family
`XP_057784132.1`	Pfam	`PF00756`	Esterase	Domain	192	231	0.00013	22.6	Putative esterase
`XP_057784133.1`	Pfam	`PF12146`	Hydrolase_4	Domain	103	345	4.3e-65	220.1	Serine aminopeptidase, S33
`XP_057784133.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	107	344	1.4e-14	55.0	alpha/beta hydrolase fold
`XP_057784133.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	111	330	1.8e-10	42.6	Alpha/beta hydrolase family
`XP_057784135.1`	Pfam	`PF12146`	Hydrolase_4	Domain	97	339	4.2e-65	220.1	Serine aminopeptidase, S33
`XP_057784135.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	101	338	1.4e-14	55.1	alpha/beta hydrolase fold
`XP_057784135.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	105	324	1.7e-10	42.6	Alpha/beta hydrolase family
`XP_057784136.1`	Pfam	`PF12146`	Hydrolase_4	Domain	87	329	3.8e-65	220.3	Serine aminopeptidase, S33
`XP_057784136.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	91	328	1.2e-14	55.3	alpha/beta hydrolase fold
`XP_057784136.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	95	314	1.6e-10	42.7	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057928150.1
CAAAAAGTTCTTTAAGCTACCACCAAATATGTGAGATCCAAACAGGTTCCATCAACTTCTTGATGTATATATATGCAACTTATCTTATCTTCCAATTTATATGCAATTTTCCATCTTTCACCATCCATTTTCTCTCCTAAAGCATACCGATTCAATAAGCTAATGAACTCATTTAACATATTGCATTATCTCTCTTCCACATGGCACTGAAATCCACAGAGATTTATAAGCGTCGGCTTTTCTATGTAAAGCCCAAGATT...

XM_057928153.1
CAAAAAGTTCTTTAAGCTACCACCAAATATGTGAGATCCAAACAGGTTCCATCAACTTCTTGATGTATATATATGCAACTTATCTTATCTTCCAATTTATATGCAATTTTCCATCTTTCACCATCCATTTTCTCTCCTAAAGCATACCGATTCAATAAGCTAATGAACTCATTTAACATATTGCATTATCTCTCTTCCACATGGCACTGAAATCCACAGAGATTTATAAGCGTCGGCTTTTCTATGCCCAAGATTTCTCC...

CDS

4 records

下载 CDS FASTA

LOC131001619
ATGGCACTGAAATCCACAGAGATTTATAAGCGTCGGCTTTTCTATGTAAAGCCCAAGATTTCTCCTGCAAGGAGGAAGAGTGAGAGAGAAGTGAGGGTAATGAGCAATCCAGTGAAGTTCGAGGATGTCAGTGAGGAGTTGCAGAAGATTCTGGATGCTGATATGGACCAAGCGGGGCCCAGGCGTCGTGCTCGTGAGGCCTTCAAGCACATTCAGCTCTCCATTGATCATATCTTGTTTAAGATGCCATGTGACAGGTT...

Protein

4 records

下载 Protein FASTA

XP_057784132.1
MALKSTEIYKRRLFYVKPKISPARRKSEREVRVMSNPVKFEDVSEELQKILDADMDQAGPRRRAREAFKHIQLSIDHILFKMPCDRLKMTESYDVNSRGLEIFSKSWVPESSSPKAVVCYCHGYGDTCTFFFEGIARKLASSGYAVFGMDYPGFGLSEGLHGYIPNFDLIVDDVIEHYSKLKEKPEFRLLPSFLFGQSMGGAVALKVHLKQPDAWNGAVLVAPMCKIADEMVPPWPVAQILIGIAKLLPKQKLVPQKDLA...

XP_057784133.1
MALKSTEIYKRRLFYVKPKISPARRKSEREVRVMSNPVKFEDVSEELQKILDADMDQAGPRRRAREAFKHIQLSIDHILFKSYDVNSRGLEIFSKSWVPESSSPKAVVCYCHGYGDTCTFFFEGIARKLASSGYAVFGMDYPGFGLSEGLHGYIPNFDLIVDDVIEHYSKLKEKPEFRLLPSFLFGQSMGGAVALKVHLKQPDAWNGAVLVAPMCKIADEMVPPWPVAQILIGIAKLLPKQKLVPQKDLAELAFREVEKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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