Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002184`

染色体: Chr08 坐标: 19729200-19740680 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002184`
名称	SmilChr08G002184
描述	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	19729200 - 19740680 / `-`

ID 对照

NCBI Gene ID	`LOC131001534`
GeneID	`131001534`
locus_tag	`-`
NCBI Name	`LOC131001534`
原始查询	`SmilChr08G002184`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4
产物	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.4
Arabidopsis	`AT1G66880` (AT1G66880) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843006] identity=42.5; qcov=1.02; evalue=0; confidence=medium
Rice	`Os01g0689900` (OsWAK10) - identity=43.6; qcov=0.759; evalue=2.08e-168; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind); PF14380 (WAK_assoc)
InterPro	-
eggNOG	-
NR	GeneID:131001534

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057783921.1`
2	Nucleus	细胞核	0.00000	`XP_057783921.1`
3	Chromosome	染色体	0.00000	`XP_057783921.1`
4	Centromere	着丝粒	0.00000	`XP_057783921.1`
5	Chromatin	染色质	0.00000	`XP_057783921.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:19729576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr8:19729586`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B55,C23
`Chr8:19730017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:19730053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B77,C19,D6
`Chr8:19730401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr8:19730703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr8:19730730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr8:19736395`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B15,B70,C15,C61
`Chr8:19736428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B123,B140,B26,C46
`Chr8:19736488`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B71,B77,C19,C80,D6
`Chr8:19736508`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B71,B77,C19,C80,D6
`Chr8:19736514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783921.1

922 aa

461

922

GUB_WAK_bind

WAK_assoc

GUB_WAK_bind

WAK_assoc

Pkinase

PK_Tyr_Ser-Thr

PF13947 GUB_WAK_bind 35-98 aa PF14380 WAK_assoc 164-234 aa PF13947 GUB_WAK_bind 275-342 aa PF14380 WAK_assoc 408-476 aa PF00069 Pkinase 601-870 aa PF07714 PK_Tyr_Ser-Thr 603-871 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783921.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	35	98	3.7e-29	101.6	Wall-associated receptor kinase galacturonan-binding
`XP_057783921.1`	Pfam	`PF14380`	WAK_assoc	Domain	164	234	2.3e-31	109.2	Wall-associated receptor kinase C-terminal
`XP_057783921.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	275	342	3.7e-29	101.6	Wall-associated receptor kinase galacturonan-binding
`XP_057783921.1`	Pfam	`PF14380`	WAK_assoc	Domain	408	476	2.3e-31	109.2	Wall-associated receptor kinase C-terminal
`XP_057783921.1`	Pfam	`PF00069`	Pkinase	Domain	601	870	2.2e-47	162.4	Protein kinase domain
`XP_057783921.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	603	871	5.1e-48	164.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927938.1
GAAGCGCGAGCCTAATAAGATAGGTCTCAAAATCGAATGAATAAGCATGCATACCATTTTGGGTGCAGTATTCTTAATCTTAAAGAAGGAACAATATTTGTCGAGCATGAGAGCCCTCCATCCTTATCTACCCTTATTATTATAATCACAATTTAACACAATAAAATGGAGCACCAACTCTTCTCCATACTAATCTGGCTTACCATAATCCTCCTGAATCTACCCCCAATTTCATGCTTTTCAAACGATTCATACACTAG...

CDS

1 records

下载 CDS FASTA

LOC131001534
ATGGAGCACCAACTCTTCTCCATACTAATCTGGCTTACCATAATCCTCCTGAATCTACCCCCAATTTCATGCTTTTCAAACGATTCATACACTAGATGCGGAGCTCCCTTCAACTGCGGAAAACTCACCGGAATCGGCTTCCCATTCTGGGGCCGCGATCGCCCGGCGGAATGCGGCTACGCCGCCCTCAAACTCGACTGCGAGAACGGCACCGCCGCCACGATCCAGATCAACGACGTCAAGTACCGCGTTCTGGAGTT...

Protein

1 records

下载 Protein FASTA

XP_057783921.1
MEHQLFSILIWLTIILLNLPPISCFSNDSYTRCGAPFNCGKLTGIGFPFWGRDRPAECGYAALKLDCENGTAATIQINDVKYRVLELNQGEKILKIARDDLLQSLCQPQLANTTLDPRIFAYASSYVNLTFLYGCPPVHFPVPYPFECAVKGIKERSGYVEFGSQVSGTCHASVVVPVSYASLFNFKDLTALIAEGFEVRFAVDSGGCTDCQRSGGRCGYNDAGKKFVCFCSDGSAAESKTCSGGSAAAPGEPVGNQGPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器