当前解析结果
SmilChr08G002200| 统一新 Gene ID | SmilChr08G002200 |
|---|---|
| 名称 | SmilChr08G002200 |
| 描述 | protein DETOXIFICATION 13-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 19937048 - 19937951 / - |
| NCBI Gene ID | LOC131001734 |
|---|---|
| GeneID | 131001734 |
| locus_tag | - |
| NCBI Name | LOC131001734 |
| 原始查询 | SmilChr08G002200 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein DETOXIFICATION 13-like |
| 产物 | protein DETOXIFICATION 13-like |
| Arabidopsis | AT1G15170 (AT1G15170)MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:838083] identity=56.4; qcov=0.783; evalue=1.29e-30; confidence=medium |
| Rice | Os01g0504500- identity=55.9; qcov=0.85; evalue=2.54e-33; confidence=medium |
| GO | GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001734 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057784280.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057784280.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057784280.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057784280.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784280.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:19937250 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:19937258 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr8:19937290 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B137,B48,B86,C34 |
Chr8:19937297 |
A |
AAG |
2bp_insertion | frameshift_variant | 2 | B48,D5 |
Chr8:19937297 |
A |
AAG |
2bp_insertion | CDS_variant | 2 | B48,D5 |
Chr8:19937310 |
CT |
* |
1bp_deletion | CDS_variant | 5 | A21,B107,B113,B124,B46 |
Chr8:19937447 |
CTT |
C |
2bp_deletion | frameshift_variant | 5 | A22,B125,B36,B47,B69 |
Chr8:19937447 |
CTT |
C |
2bp_deletion | CDS_variant | 5 | A22,B125,B36,B47,B69 |
Chr8:19937510 |
TG |
T |
1bp_deletion | frameshift_variant | 45 | A13,A18,A5,B101,B105,B106,B107,B108,B117,B120,B13,B130,B133,B19,B46,B50,B52,B6,B60,B72,B74,B75,B84,B85,B87,B91,B94,B99,C1,C16,C26,C28,C34,C42,C5,C55,C60,C65,C67,C72,C74,C81,C82,C86,D3 |
Chr8:19937616 |
GC |
G |
1bp_deletion | frameshift_variant | 55 | A16,A7,B10,B101,B104,B110,B112,B12,B121,B126,B127,B14,B15,B16,B2,B23,B32,B33,B35,B4,B44,B54,B65,B70,B73,B77,B78,B79,B89,B93,B98,C13,C14,C15,C18,C19,C2,C20,C22,C25,C29,C3,C37,C39,C4,C43,C47,C50,C53,C61,C62,C7,C84,D10,D7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。