Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002201

染色体: Chr08 坐标: 19939413-19942845 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002201
名称SmilChr08G002201
描述protein DETOXIFICATION 12-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向19939413 - 19942845 / -

ID 对照

NCBI Gene IDLOC131001733
GeneID131001733
locus_tag-
NCBI NameLOC131001733
原始查询SmilChr08G002201

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein DETOXIFICATION 12-like
产物protein DETOXIFICATION 12-like
ArabidopsisAT1G71140 (AT1G71140)
MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:843454]
identity=47.9; qcov=0.944; evalue=6.4e-148; confidence=high
RiceOs01g0684900
-
identity=47.4; qcov=0.935; evalue=1.51e-146; confidence=high
GOGO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG-
PfamPF01554 (MatE)
InterPro-
eggNOG-
NRGeneID:131001733

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057784277.1
2 Vacuole 液泡 0.60000 XP_057784277.1
3 Vacuole membrane 液泡膜 0.60000 XP_057784277.1
4 Nucleus 细胞核 0.00000 XP_057784277.1
5 Chromosome 染色体 0.00000 XP_057784277.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:19940615 C T EMS_canonical_SNV CDS_variant 3 B2,B55,B9
Chr8:19940637 G A EMS_canonical_SNV CDS_variant 3 B15,B84,D6
Chr8:19940691 G A EMS_canonical_SNV CDS_variant 1 D6
Chr8:19940694 C T EMS_canonical_SNV CDS_variant 3 A15,B1,B38
Chr8:19940703 C T EMS_canonical_SNV CDS_variant 1 B84
Chr8:19940706 G A EMS_canonical_SNV CDS_variant 1 B9
Chr8:19940745 G A EMS_canonical_SNV CDS_variant 3 B2,B55,C23
Chr8:19940769 C T EMS_canonical_SNV CDS_variant 1 B9
Chr8:19940782 G A EMS_canonical_SNV CDS_variant 5 B1,B15,B62,C64,C66
Chr8:19940820 C T EMS_canonical_SNV CDS_variant 1 B2
Chr8:19940975 G A EMS_canonical_SNV CDS_variant 3 B2,B55,C23
Chr8:19940981 G A EMS_canonical_SNV CDS_variant 5 B71,B78,C71,C80,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057784277.1
490 aa
N
1
245
490
MatE
MatE
C
PF01554 MatE 35-194 aa PF01554 MatE 256-418 aa
XP_057784278.1
480 aa
N
1
240
480
MatE
MatE
C
PF01554 MatE 35-194 aa PF01554 MatE 258-408 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784277.1 Pfam PF01554 MatE Family 35 194 8.5e-48 162.8 MatE
XP_057784277.1 Pfam PF01554 MatE Family 256 418 8.5e-48 162.8 MatE
XP_057784278.1 Pfam PF01554 MatE Family 35 194 3.5e-41 141.3 MatE
XP_057784278.1 Pfam PF01554 MatE Family 258 408 3.5e-41 141.3 MatE

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057928294.1
ATACAAAACAAAGGAGTGCACGGAAAGTAGGATGCGGCCACGTGTAATTGAGTGGAGGTATAAAATTGGGCAACTTTTACTAATACACAACTCTCAACATACGAATCCTACGTAAAAAGGAGTCCGGTGAGAATGGAGGTGGAGAGGCTAGTGCCGAAGCGAAGCGCCGCAGCCGCAGCCGCGAGGAAAATCGCCTTCACGGCGGAGGTGAATCGTGTGAATTGGATCGCTCTGCCGATGATCGTGGTGACGGTGTCGCA...
XM_057928295.1
GTATACAAAACAAAGGAGTGCACGGAAAGTAGGATGCGGCCACGTGTAATTGAGTGGAGGTATAAAATTGGGCAACTTTTACTAATACACAACTCTCAACATACGAATCCTACGTAAAAAGGAGTCCGGTGAGAATGGAGGTGGAGAGGCTAGTGCCGAAGCGAAGCGCCGCAGCCGCAGCCGCGAGGAAAATCGCCTTCACGGCGGAGGTGAATCGTGTGAATTGGATCGCTCTGCCGATGATCGTGGTGACGGTGTCG...

CDS

2 records

下载 CDS FASTA
LOC131001733
ATGGAGGTGGAGAGGCTAGTGCCGAAGCGAAGCGCCGCAGCCGCAGCCGCGAGGAAAATCGCCTTCACGGCGGAGGTGAATCGTGTGAATTGGATCGCTCTGCCGATGATCGTGGTGACGGTGTCGCAGTTTCTGCTGCGGGTTTCGCCCATGTTCATGCTCGGCCACGTCGACCAACTCTCCCTTTCCAGTGCTTCCATCGCCACCTCTCTTTGCAACGTCACCGGATTCAGTGTCGTTTTTGGGATGGCTAGTGCTCT...
LOC131001733
ATGGAGGTGGAGAGGCTAGTGCCGAAGCGAAGCGCCGCAGCCGCAGCCGCGAGGAAAATCGCCTTCACGGCGGAGGTGAATCGTGTGAATTGGATCGCTCTGCCGATGATCGTGGTGACGGTGTCGCAGTTTCTGCTGCGGGTTTCGCCCATGTTCATGCTCGGCCACGTCGACCAACTCTCCCTTTCCAGTGCTTCCATCGCCACCTCTCTTTGCAACGTCACCGGATTCAGTGTCGTTTTTGGGATGGCTAGTGCTCT...

Protein

2 records

下载 Protein FASTA
XP_057784277.1
MEVERLVPKRSAAAAAARKIAFTAEVNRVNWIALPMIVVTVSQFLLRVSPMFMLGHVDQLSLSSASIATSLCNVTGFSVVFGMASALETLCGQAYGAKQYKRVGTLTYGAMLCLFLVCIAVSLVFILTERVLLMTGQDPSISAAAGKFAIQLIPTLFPYAFLQCIVRYLQSQSLIFPMVWSSLASLCFQLPLCWAFIFRFHLGNSGAAISIAISSWFNVVLLVLYVMYSSACQETRAPLSWDVLVTMREFFQLAIPSAAM...
XP_057784278.1
MEVERLVPKRSAAAAAARKIAFTAEVNRVNWIALPMIVVTVSQFLLRVSPMFMLGHVDQLSLSSASIATSLCNVTGFSVVFGMASALETLCGQAYGAKQYKRVGTLTYGAMLCLFLVCIAVSLVFILTERVLLMTGQDPSISAAAGKFAIQLIPTLFPYAFLQCIVRYLQSQSLIFPMVWSSLASLCFQLPLCWAFIFRFHLGNSGAAISIAISSWFNVVLLVLYVMYSSACQETRAPLSWDVLVTMREFFQLAIPSAAM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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