当前解析结果
SmilChr08G002209| 统一新 Gene ID | SmilChr08G002209 |
|---|---|
| 名称 | SmilChr08G002209 |
| 描述 | pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 20047867 - 20049828 / + |
| NCBI Gene ID | LOC131001742 |
|---|---|
| GeneID | 131001742 |
| locus_tag | - |
| NCBI Name | LOC131001742 |
| 原始查询 | SmilChr08G002209 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At1g77360%2C mitochondrial-like |
| Arabidopsis | AT1G77360 (APPR6)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844072] identity=27.4; qcov=0.826; evalue=2.56e-46; confidence=low |
| Rice | Os02g0711100- identity=43.5; qcov=0.89; evalue=1.17e-120; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0008380 (RNA splicing) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001742 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057784289.1 |
| 2 | Chloroplast | 叶绿体 | 0.20000 | XP_057784289.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057784289.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784289.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784289.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:20048552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B35,B42,B43 |
Chr8:20048819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B131 |
Chr8:20048872 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr8:20048972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B131 |
Chr8:20049179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B111,B21,B28 |
Chr8:20049196 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B3,B86 |
Chr8:20049197 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:20049266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B128,B138,B77,C38 |
Chr8:20049302 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr8:20049322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C64 |
Chr8:20049558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B36,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784289.1PF12854
PPR_1 344-375 aa
PF13812
PPR_3 346-381 aa
PF13041
PPR_2 346-393 aa
PF01535
PPR 349-375 aa
PF01535
PPR 385-412 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784289.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 344 | 375 | 1.9e-17 | 63.4 | PPR repeat |
XP_057784289.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 346 | 381 | 2.9e-11 | 44.0 | Pentatricopeptide repeat domain |
XP_057784289.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 346 | 393 | 5.6e-28 | 97.5 | PPR repeat family |
XP_057784289.1 |
Pfam | PF01535 |
PPR | Repeat | 349 | 375 | 2.4e-18 | 65.7 | PPR repeat |
XP_057784289.1 |
Pfam | PF01535 |
PPR | Repeat | 385 | 412 | 2.4e-18 | 65.7 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。