当前解析结果
SmilChr08G002227| 统一新 Gene ID | SmilChr08G002227 |
|---|---|
| 名称 | SmilChr08G002227 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 20334256 - 20336754 / + |
| NCBI Gene ID | LOC130998175 |
|---|---|
| GeneID | 130998175 |
| locus_tag | - |
| NCBI Name | LOC130998175 |
| 原始查询 | SmilChr08G002227 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=29; qcov=0.747; evalue=1.67e-71; confidence=low |
| Rice | Os06g0166100- identity=34.9; qcov=0.748; evalue=3.82e-98; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998175 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779590.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779590.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779590.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779590.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779590.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:20334308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,B8 |
Chr8:20334314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,B8 |
Chr8:20334325 |
AC |
A |
1bp_deletion | frameshift_variant | 62 | A1,A2,A25,A8,B102,B103,B104,B106,B107,B108,B112,B117,B120,B126,B129,B132,B136,B139,B15,B19,B20,B24,B26,B3,B33,B35,B38,B39,B4,B42,B43,B46,B47,B57,B64,B77,B80,B87,B93,B95,C16,C19,C22,C23,C24,C26,C37,C38,C41,C48,C56,C58,C6,C64,C66,C70,C76,C78,C8,C85,C86,C9 |
Chr8:20334490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr8:20334605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C9 |
Chr8:20334637 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A10,A25,A3,A7,B134,B40,B49,C1,C58 |
Chr8:20334656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,C22 |
Chr8:20334799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
Chr8:20334804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
Chr8:20334810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
Chr8:20334829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B72 |
Chr8:20334856 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779590.1PF03101
FAR1 111-200 aa
PF21056
ZSWIM1-3_RNaseH-like 295-403 aa
PF10551
MULE 324-418 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779590.1 |
Pfam | PF03101 |
FAR1 | Domain | 111 | 200 | 1.2e-14 | 55.5 | FAR1 DNA-binding domain |
XP_057779590.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 295 | 403 | 8.1e-07 | 29.7 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057779590.1 |
Pfam | PF10551 |
MULE | Domain | 324 | 418 | 3.8e-27 | 95.2 | MULE transposase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。