当前解析结果
SmilChr08G002238| 统一新 Gene ID | SmilChr08G002238 |
|---|---|
| 名称 | SmilChr08G002238 |
| 描述 | glycine-rich domain-containing protein 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 20511300 - 20516797 / + |
| NCBI Gene ID | LOC131001768 |
|---|---|
| GeneID | 131001768 |
| locus_tag | - |
| NCBI Name | LOC131001768 |
| 原始查询 | SmilChr08G002238 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycine-rich domain-containing protein 1-like |
| 产物 | glycine-rich domain-containing protein 1-like |
| Arabidopsis | AT2G22660 (AT2G22660)DNA-binding protein, putative (duplicated DUF1399) [Source:NCBI gene (formerly Entrezgene);Acc:816797] identity=49.4; qcov=0.93; evalue=0; confidence=high |
| Rice | Os11g0621300- identity=45; qcov=0.779; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF07173 (GRDP-like); PF25334 (C2_GRDP); PF25335 (GRDP_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001768 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057784319.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057784319.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057784319.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057784319.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784319.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:20512609 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:20512662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,C42,C8 |
Chr8:20512678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:20514097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:20514194 |
AG |
A |
1bp_deletion | frameshift_variant | 12 | B101,B121,B132,B53,B54,B64,B85,C11,C34,C52,C56,C59 |
Chr8:20514356 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | C38,C61 |
Chr8:20514356 |
T |
TC |
1bp_insertion | CDS_variant | 2 | C38,C61 |
Chr8:20514398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B111,B21,B28,C40 |
Chr8:20515028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B26,B7,B80,C77 |
Chr8:20516000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,C58,C65 |
Chr8:20516655 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C52 |
Chr8:20516655 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784319.1PF07173
GRDP-like 10-98 aa
PF07173
GRDP-like 94-237 aa
PF25334
C2_GRDP 322-453 aa
PF25335
GRDP_C 491-627 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784319.1 |
Pfam | PF07173 |
GRDP-like | Family | 10 | 98 | 1.3e-62 | 211.4 | Glycine-rich domain-containing protein-like |
XP_057784319.1 |
Pfam | PF07173 |
GRDP-like | Family | 94 | 237 | 1.3e-62 | 211.4 | Glycine-rich domain-containing protein-like |
XP_057784319.1 |
Pfam | PF25334 |
C2_GRDP | Domain | 322 | 453 | 4e-59 | 199.2 | C2 domain of glycine-rich domain-containing protein |
XP_057784319.1 |
Pfam | PF25335 |
GRDP_C | Domain | 491 | 627 | 9.8e-32 | 110.8 | Glycine Rich Domain Protein C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。