Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002243`

染色体: Chr08 坐标: 20584252-20592753 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002243`
名称	SmilChr08G002243
描述	uncharacterized SmilChr08G002243
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	20584252 - 20592753 / `+`

ID 对照

NCBI Gene ID	`LOC131001772`
GeneID	`131001772`
locus_tag	`-`
NCBI Name	`LOC131001772`
原始查询	`SmilChr08G002243`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0208400; species=rice; confidence=medium
产物	hit=Os08g0208400; species=rice; confidence=medium
Arabidopsis	`-` -
Rice	`Os08g0208400` - identity=42.8; qcov=0.732; evalue=0; confidence=medium
GO	-
KEGG	-
Pfam	PF02992 (Transposase_21); PF13952 (DUF4216); PF13960 (DUF4218); PF13963 (Transpos_assoc)
InterPro	-
eggNOG	-
NR	GeneID:131001772

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784325.1`
2	Chromosome	染色体	0.00000	`XP_057784325.1`
3	Centromere	着丝粒	0.00000	`XP_057784325.1`
4	Chromatin	染色质	0.00000	`XP_057784325.1`
5	Telomere	端粒	0.00000	`XP_057784325.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:20585619`	`A`	`AT`	1bp_insertion	stop_gained,frameshift_variant	11	B20,B59,B62,B92,C14,C16,C21,C54,C63,C73,C79
`Chr8:20585779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,B118,B126
`Chr8:20585782`	`G`	`A`	EMS_canonical_SNV	stop_gained	8	A25,B108,B136,B50,B54,B6,C39,C63
`Chr8:20585799`	`G`	`GA`	1bp_insertion	frameshift_variant	8	B105,B120,B136,B50,B77,B95,C12,C59
`Chr8:20585970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:20586034`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B112
`Chr8:20586034`	`TA`	`T`	1bp_deletion	CDS_variant	1	B112
`Chr8:20586038`	`G`	`GT`	1bp_insertion	stop_gained,frameshift_variant	1	B112
`Chr8:20586038`	`G`	`GT`	1bp_insertion	CDS_variant	1	B112
`Chr8:20586253`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr8:20586462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr8:20586465`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784325.1

1134 aa

567

1134

Transpos_assoc

Transposase_21

DUF4218

DUF4216

PF13963 Transpos_assoc 4-76 aa PF02992 Transposase_21 279-485 aa PF13960 DUF4218 671-783 aa PF13952 DUF4216 943-1015 aa

XP_057784326.1

1134 aa

567

1134

Transpos_assoc

Transposase_21

DUF4218

DUF4216

PF13963 Transpos_assoc 4-76 aa PF02992 Transposase_21 279-485 aa PF13960 DUF4218 671-783 aa PF13952 DUF4216 943-1015 aa

XP_057784327.1

1134 aa

567

1134

Transpos_assoc

Transposase_21

DUF4218

DUF4216

PF13963 Transpos_assoc 4-76 aa PF02992 Transposase_21 279-485 aa PF13960 DUF4218 671-783 aa PF13952 DUF4216 943-1015 aa

XP_057784328.1

1134 aa

567

1134

Transpos_assoc

Transposase_21

DUF4218

DUF4216

PF13963 Transpos_assoc 4-76 aa PF02992 Transposase_21 279-485 aa PF13960 DUF4218 671-783 aa PF13952 DUF4216 943-1015 aa

XP_057784329.1

1134 aa

567

1134

Transpos_assoc

Transposase_21

DUF4218

DUF4216

PF13963 Transpos_assoc 4-76 aa PF02992 Transposase_21 279-485 aa PF13960 DUF4218 671-783 aa PF13952 DUF4216 943-1015 aa

XP_057784330.1

1134 aa

567

1134

Transpos_assoc

Transposase_21

DUF4218

DUF4216

PF13963 Transpos_assoc 4-76 aa PF02992 Transposase_21 279-485 aa PF13960 DUF4218 671-783 aa PF13952 DUF4216 943-1015 aa

XP_057784331.1

1134 aa

567

1134

Transpos_assoc

Transposase_21

DUF4218

DUF4216

PF13963 Transpos_assoc 4-76 aa PF02992 Transposase_21 279-485 aa PF13960 DUF4218 671-783 aa PF13952 DUF4216 943-1015 aa

XP_057784332.1

1134 aa

567

1134

Transpos_assoc

Transposase_21

DUF4218

DUF4216

PF13963 Transpos_assoc 4-76 aa PF02992 Transposase_21 279-485 aa PF13960 DUF4218 671-783 aa PF13952 DUF4216 943-1015 aa

XP_057784333.1

1134 aa

567

1134

Transpos_assoc

Transposase_21

DUF4218

DUF4216

PF13963 Transpos_assoc 4-76 aa PF02992 Transposase_21 279-485 aa PF13960 DUF4218 671-783 aa PF13952 DUF4216 943-1015 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784325.1`	Pfam	`PF13963`	Transpos_assoc	Domain	4	76	1.3e-20	74.0	Transposase-associated domain
`XP_057784325.1`	Pfam	`PF02992`	Transposase_21	Family	279	485	2.8e-93	311.7	Transposase family tnp2
`XP_057784325.1`	Pfam	`PF13960`	DUF4218	Domain	671	783	5.6e-43	146.1	Domain of unknown function (DUF4218)
`XP_057784325.1`	Pfam	`PF13952`	DUF4216	Domain	943	1015	3.9e-23	82.5	Domain of unknown function (DUF4216)
`XP_057784326.1`	Pfam	`PF13963`	Transpos_assoc	Domain	4	76	1.3e-20	74.0	Transposase-associated domain
`XP_057784326.1`	Pfam	`PF02992`	Transposase_21	Family	279	485	2.8e-93	311.7	Transposase family tnp2
`XP_057784326.1`	Pfam	`PF13960`	DUF4218	Domain	671	783	5.6e-43	146.1	Domain of unknown function (DUF4218)
`XP_057784326.1`	Pfam	`PF13952`	DUF4216	Domain	943	1015	3.9e-23	82.5	Domain of unknown function (DUF4216)
`XP_057784327.1`	Pfam	`PF13963`	Transpos_assoc	Domain	4	76	1.3e-20	74.0	Transposase-associated domain
`XP_057784327.1`	Pfam	`PF02992`	Transposase_21	Family	279	485	2.8e-93	311.7	Transposase family tnp2
`XP_057784327.1`	Pfam	`PF13960`	DUF4218	Domain	671	783	5.6e-43	146.1	Domain of unknown function (DUF4218)
`XP_057784327.1`	Pfam	`PF13952`	DUF4216	Domain	943	1015	3.9e-23	82.5	Domain of unknown function (DUF4216)
`XP_057784328.1`	Pfam	`PF13963`	Transpos_assoc	Domain	4	76	1.3e-20	74.0	Transposase-associated domain
`XP_057784328.1`	Pfam	`PF02992`	Transposase_21	Family	279	485	2.8e-93	311.7	Transposase family tnp2
`XP_057784328.1`	Pfam	`PF13960`	DUF4218	Domain	671	783	5.6e-43	146.1	Domain of unknown function (DUF4218)
`XP_057784328.1`	Pfam	`PF13952`	DUF4216	Domain	943	1015	3.9e-23	82.5	Domain of unknown function (DUF4216)
`XP_057784329.1`	Pfam	`PF13963`	Transpos_assoc	Domain	4	76	1.3e-20	74.0	Transposase-associated domain
`XP_057784329.1`	Pfam	`PF02992`	Transposase_21	Family	279	485	2.8e-93	311.7	Transposase family tnp2
`XP_057784329.1`	Pfam	`PF13960`	DUF4218	Domain	671	783	5.6e-43	146.1	Domain of unknown function (DUF4218)
`XP_057784329.1`	Pfam	`PF13952`	DUF4216	Domain	943	1015	3.9e-23	82.5	Domain of unknown function (DUF4216)
`XP_057784330.1`	Pfam	`PF13963`	Transpos_assoc	Domain	4	76	1.3e-20	74.0	Transposase-associated domain
`XP_057784330.1`	Pfam	`PF02992`	Transposase_21	Family	279	485	2.8e-93	311.7	Transposase family tnp2
`XP_057784330.1`	Pfam	`PF13960`	DUF4218	Domain	671	783	5.6e-43	146.1	Domain of unknown function (DUF4218)
`XP_057784330.1`	Pfam	`PF13952`	DUF4216	Domain	943	1015	3.9e-23	82.5	Domain of unknown function (DUF4216)
`XP_057784331.1`	Pfam	`PF13963`	Transpos_assoc	Domain	4	76	1.3e-20	74.0	Transposase-associated domain
`XP_057784331.1`	Pfam	`PF02992`	Transposase_21	Family	279	485	2.8e-93	311.7	Transposase family tnp2
`XP_057784331.1`	Pfam	`PF13960`	DUF4218	Domain	671	783	5.6e-43	146.1	Domain of unknown function (DUF4218)
`XP_057784331.1`	Pfam	`PF13952`	DUF4216	Domain	943	1015	3.9e-23	82.5	Domain of unknown function (DUF4216)
`XP_057784332.1`	Pfam	`PF13963`	Transpos_assoc	Domain	4	76	1.3e-20	74.0	Transposase-associated domain
`XP_057784332.1`	Pfam	`PF02992`	Transposase_21	Family	279	485	2.8e-93	311.7	Transposase family tnp2
`XP_057784332.1`	Pfam	`PF13960`	DUF4218	Domain	671	783	5.6e-43	146.1	Domain of unknown function (DUF4218)
`XP_057784332.1`	Pfam	`PF13952`	DUF4216	Domain	943	1015	3.9e-23	82.5	Domain of unknown function (DUF4216)
`XP_057784333.1`	Pfam	`PF13963`	Transpos_assoc	Domain	4	76	1.3e-20	74.0	Transposase-associated domain
`XP_057784333.1`	Pfam	`PF02992`	Transposase_21	Family	279	485	2.8e-93	311.7	Transposase family tnp2
`XP_057784333.1`	Pfam	`PF13960`	DUF4218	Domain	671	783	5.6e-43	146.1	Domain of unknown function (DUF4218)
`XP_057784333.1`	Pfam	`PF13952`	DUF4216	Domain	943	1015	3.9e-23	82.5	Domain of unknown function (DUF4216)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XR_009094028.1
AAAATATCATTTCACCGCCATCCACAAGTGGGCGGTTACTTATTCTCAAAATGGCCAAATGTCTTTCCTCTCCAACAGGCAAGCTCGATTCGAATTATGGTAGGGGTTCTTTCGCTTTTGCTAGATCTAGAGAGATACTACAAGTTGTCCGTCCCAGATTCCATCGCCGCGGCCATCTGGTTCACCGGTGTAGCCTTCCCAACATCAAATTCCCCAAACTCATATTTAGATTTTTACCAAAACTTCACACAACCCTCAAT...

XM_057928342.1
AACAGTATATATATATTACGAATAGTAAATAATGTTAATAATCTATATATCCTTAATTCAAATACCATCCTTTTCTTTTTATTAGGAAATAAGTTGGTTGTTCTAAAAAGATTTGTTTTAGATTCTTTTGACTATTTCATGTATATCTCCTGATTTTGTTAGCCAAATCTACAATGTAATCTCTATATATATTTGAATTATTGAGCTGAGTGGTCATGTCTCTTCTCCTTCTACTGTAGTAAATTCATGTGATTAATCTA...

CDS

9 records

下载 CDS FASTA

LOC131001772
ATGGATCATCAATGGGTAAAGAATAGGAATCGAATTTCTTCAGAGTATATTGATGGAATAAAGGAGTTCATGCATGTTGCTAGACAAAGTTTGAATTTAGATGGATTAACCTTGTGCCCTTGCAACAACTGTTTGAATACAAGATTGCAAAGTATGGAAGACATTAAACTTCACTTGATTGATGTGGGAATTGATACTTCATACACACGATGGGTCTACCATGGTGAGGAAAAAACAGATGAGGATTTTGATGGGGTTTT...

Protein

9 records

下载 Protein FASTA

XP_057784325.1
MDHQWVKNRNRISSEYIDGIKEFMHVARQSLNLDGLTLCPCNNCLNTRLQSMEDIKLHLIDVGIDTSYTRWVYHGEEKTDEDFDGVFANDDVGLEAGLHDAVGNQFFDIGPTDDLIENQQPNHENNARYEKLFEAVHNPLYEGCGESALTFVVKLMNIKVLNKWSDKSFEMLLKLLHEVLPQDNNCPDSYYNTRKLLCEVGLGYDTIDVCLYDCAIFYGEYENATVCPVCKSGRYIRHKIPHKRLRYFPITPRLKRLYAS...

XP_057784326.1
MDHQWVKNRNRISSEYIDGIKEFMHVARQSLNLDGLTLCPCNNCLNTRLQSMEDIKLHLIDVGIDTSYTRWVYHGEEKTDEDFDGVFANDDVGLEAGLHDAVGNQFFDIGPTDDLIENQQPNHENNARYEKLFEAVHNPLYEGCGESALTFVVKLMNIKVLNKWSDKSFEMLLKLLHEVLPQDNNCPDSYYNTRKLLCEVGLGYDTIDVCLYDCAIFYGEYENATVCPVCKSGRYIRHKIPHKRLRYFPITPRLKRLYAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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