当前解析结果
SmilChr08G002261| 统一新 Gene ID | SmilChr08G002261 |
|---|---|
| 名称 | SmilChr08G002261 |
| 描述 | uncharacterized SmilChr08G002261 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 20876154 - 20877303 / + |
| NCBI Gene ID | LOC130998185 |
|---|---|
| GeneID | 130998185 |
| locus_tag | - |
| NCBI Name | LOC130998185 |
| 原始查询 | SmilChr08G002261 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger MYM-type-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826552]; symbol=AT4G09660; hit=AT4G09660; species=arabidopsis; confidence=medium |
| 产物 | zinc finger MYM-type-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826552]; symbol=AT4G09660; hit=AT4G09660; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G09660 (AT4G09660)zinc finger MYM-type-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826552] identity=39.2; qcov=0.879; evalue=7.28e-34; confidence=medium |
| Rice | Os09g0290900- identity=44; qcov=0.442; evalue=2.03e-17; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF14291 (DUF4371) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998185 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.40000 | XP_057779600.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057779600.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057779600.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779600.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779600.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:20876193 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C82 |
Chr8:20876225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,B38,B39,C22 |
Chr8:20876237 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr8:20876247 |
C |
T |
EMS_canonical_SNV | stop_gained | 58 | A10,A2,A5,B112,B115,B122,B125,B135,B138,B14,B16,B17,B24,B34,B38,B39,B40,B42,B43,B44,B45,B47,B52,B55,B56,B60,B7,B77,B80,B93,B96,C11,C13,C16,C19,C21,C22,C28,C29,C36,C39,C43,C45,C52,C54,C59,C6,C61,C69,C78,C80,C84,C85,D10,D11,D2,D4,D6 |
Chr8:20876256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr8:20876339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B36,C83 |
Chr8:20876350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,B38,B39,C22 |
Chr8:20876446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B52,B6,C40,C56 |
Chr8:20876461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B36,B48,C83 |
Chr8:20876475 |
C |
T |
EMS_canonical_SNV | stop_gained | 75 | A1,A14,A20,A8,B1,B101,B103,B107,B108,B111,B112,B114,B120,B122,B125,B126,B13,B134,B135,B137,B139,B19,B22,B26,B29,B3,B31,B32,B33,B37,B39,B41,B49,B50,B52,B54,B57,B6,B64,B77,B82,B84,B86,B9,B90,B95,B98,B99,C20,C22,C24,C25,C29,C31,C34,C39,C40,C42,C47,C5,C51,C56,C58,C62,C63,C67,C69,C73,C78,C82,C85,C86,C9,D10,D8 |
Chr8:20876492 |
AG |
A |
1bp_deletion | frameshift_variant | 23 | A22,A4,A7,A9,B10,B105,B11,B118,B21,B22,B4,B7,B71,B99,C38,C46,C5,C52,C61,C62,C65,C79,C84 |
Chr8:20877106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779600.1PF14291
DUF4371 73-118 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779600.1 |
Pfam | PF14291 |
DUF4371 | Domain | 73 | 118 | 4.2e-17 | 63.2 | ZMYM1/FAM200, RNase-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。