当前解析结果
SmilChr08G002266| 统一新 Gene ID | SmilChr08G002266 |
|---|---|
| 名称 | SmilChr08G002266 |
| 描述 | probable hexokinase-like 2 protein |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 20915131 - 20917176 / + |
| NCBI Gene ID | LOC131001790 |
|---|---|
| GeneID | 131001790 |
| locus_tag | - |
| NCBI Name | LOC131001790 |
| 原始查询 | SmilChr08G002266 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable hexokinase-like 2 protein |
| 产物 | probable hexokinase-like 2 protein |
| Arabidopsis | AT4G37840 (HKL3)hexokinase-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:829940] identity=52.6; qcov=1.03; evalue=2.07e-156; confidence=high |
| Rice | Os01g0722700 (OsHXK9)- identity=41.5; qcov=0.977; evalue=9.3e-126; confidence=medium |
| GO | GO:0001678 (intracellular glucose homeostasis); GO:0004340 (glucokinase activity); GO:0005524 (ATP binding); GO:0005536 (D-glucose binding); GO:0005739 (mitochondrion); GO:0005829 (cytosol); GO:0006096 (glycolytic process); GO:0008865 (fructokinase activity); GO:0019158 (mannokinase activity); GO:0051156 (glucose 6-phosphate metabolic process) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00349 (Hexokinase_1); PF03727 (Hexokinase_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001790 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.60000 | XP_057784365.1 |
| 2 | Lipid droplet | 脂滴 | 0.40000 | XP_057784365.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057784365.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057784365.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057784365.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:20916289 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,B94,C5,C82 |
Chr8:20916448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C58,C65 |
Chr8:20916669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B106,B129,B132,B136 |
Chr8:20916746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,C40 |
Chr8:20916758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,B86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057784365.1PF00349
Hexokinase_1 42-236 aa
PF03727
Hexokinase_2 244-474 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784365.1 |
Pfam | PF00349 |
Hexokinase_1 | Domain | 42 | 236 | 1.9e-31 | 110.1 | Hexokinase |
XP_057784365.1 |
Pfam | PF03727 |
Hexokinase_2 | Domain | 244 | 474 | 5.7e-64 | 216.5 | Hexokinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。