Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002266

染色体: Chr08 坐标: 20915131-20917176 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002266
名称SmilChr08G002266
描述probable hexokinase-like 2 protein
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向20915131 - 20917176 / +

ID 对照

NCBI Gene IDLOC131001790
GeneID131001790
locus_tag-
NCBI NameLOC131001790
原始查询SmilChr08G002266

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable hexokinase-like 2 protein
产物probable hexokinase-like 2 protein
ArabidopsisAT4G37840 (HKL3)
hexokinase-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:829940]
identity=52.6; qcov=1.03; evalue=2.07e-156; confidence=high
RiceOs01g0722700 (OsHXK9)
-
identity=41.5; qcov=0.977; evalue=9.3e-126; confidence=medium
GOGO:0001678 (intracellular glucose homeostasis); GO:0004340 (glucokinase activity); GO:0005524 (ATP binding); GO:0005536 (D-glucose binding); GO:0005739 (mitochondrion); GO:0005829 (cytosol); GO:0006096 (glycolytic process); GO:0008865 (fructokinase activity); GO:0019158 (mannokinase activity); GO:0051156 (glucose 6-phosphate metabolic process)
KEGGsmil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
PfamPF00349 (Hexokinase_1); PF03727 (Hexokinase_2)
InterPro-
eggNOG-
NRGeneID:131001790

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.60000 XP_057784365.1
2 Lipid droplet 脂滴 0.40000 XP_057784365.1
3 Cytoplasm 细胞质 0.20000 XP_057784365.1
4 Cytosol 细胞质基质 0.20000 XP_057784365.1
5 Nucleus 细胞核 0.00000 XP_057784365.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:20916289 C T EMS_canonical_SNV CDS_variant 4 B140,B94,C5,C82
Chr8:20916448 C T EMS_canonical_SNV CDS_variant 2 C58,C65
Chr8:20916669 C T EMS_canonical_SNV CDS_variant 5 A18,B106,B129,B132,B136
Chr8:20916746 G A EMS_canonical_SNV CDS_variant 2 B28,C40
Chr8:20916758 G A EMS_canonical_SNV CDS_variant 2 B3,B86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057784365.1
481 aa
N
1
240
481
Hexokinase_1
Hexokinase_2
C
PF00349 Hexokinase_1 42-236 aa PF03727 Hexokinase_2 244-474 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784365.1 Pfam PF00349 Hexokinase_1 Domain 42 236 1.9e-31 110.1 Hexokinase
XP_057784365.1 Pfam PF03727 Hexokinase_2 Domain 244 474 5.7e-64 216.5 Hexokinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057928382.1
ACTGAAATAACAGAGAGAAAATGACTGTTTCAAAGTCGATCTGGTTTCTCTCTTGATAACTGTTTGTACAAGTCAGTTCCACTATTTTCTTGCAAAATAATGCGTTGTGAAGCCTGAATCAAATGAAAATAATCGAAGCGATAAGCTATAGGTATAACCAGAAAGCAGCAGGCAACGTCTTTTAATTAATTTGTTGTGACGATGAAGCGGGAGGTGGCGGTAGCAGCGGCTGCGGCGACAGCAGCCGCAACGGTGGCCGG...

CDS

1 records

下载 CDS FASTA
LOC131001790
ATGAAGCGGGAGGTGGCGGTAGCAGCGGCTGCGGCGACAGCAGCCGCAACGGTGGCCGGAGTAGCTTTGCTGGTGAGGCAATGGAGGCGGCGCAGCCACCAGCAGTTGAGCGCGCAGCGCATCCTCCGCGAATTCGCAAGGCGGTGCGCGACGCCGTCGTCAAAGCTGTGGCACGTGGCGAATGAATTGGCGTCGGACATGGAAGCCGAGCTCGCTCCCGGCGACAGAAGCGGAAACCTAGGCGTCCCCGTTTCTTATCT...

Protein

1 records

下载 Protein FASTA
XP_057784365.1
MKREVAVAAAAATAAATVAGVALLVRQWRRRSHQQLSAQRILREFARRCATPSSKLWHVANELASDMEAELAPGDRSGNLGVPVSYLAGLPTGEEKGIFYGINLRGTDFVIVRAKLEGRNEPLSDVLRQEVEIPPHMLSSAESTPELCDLMALELAKFVSVHIESDSSKGARERILGFTVSLPLASSAIHSKWKRLSVDDAELVEEINRALKKHGVEMRVFAVLNETIGHLAGGRYYSKESVAAVSLGMGTDVAYIESLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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