Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002285`

染色体: Chr08 坐标: 21249060-21253230 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002285`
名称	SmilChr08G002285
描述	uncharacterized SmilChr08G002285
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	21249060 - 21253230 / `-`

ID 对照

NCBI Gene ID	`LOC131001811`
GeneID	`131001811`
locus_tag	`-`
NCBI Name	`LOC131001811`
原始查询	`SmilChr08G002285`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:836703]; symbol=AT5G65740; hit=AT5G65740; species=arabidopsis; confidence=high
产物	zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:836703]; symbol=AT5G65740; hit=AT5G65740; species=arabidopsis; confidence=high
Arabidopsis	`AT5G65740` (AT5G65740) zinc ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:836703] identity=61.8; qcov=1.02; evalue=4.51e-113; confidence=high
Rice	`Os03g0726900` - identity=57.3; qcov=0.965; evalue=9.06e-101; confidence=high
GO	GO:0005634 (nucleus); GO:0006513 (protein monoubiquitination); GO:0036297 (interstrand cross-link repair); GO:0043240 (Fanconi anaemia nuclear complex); GO:0061630 (ubiquitin protein ligase activity)
KEGG	smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage))
Pfam	PF11793 (FANCL_C); PF18890 (FANCL_d2); PF18891 (FANCL_d3)
InterPro	-
eggNOG	-
NR	GeneID:131001811

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784386.1`
2	Cytoplasm	细胞质	1.00000	`XP_057784386.1`
3	Nucleoplasm	核质	1.00000	`XP_057784389.1`
4	Cytosol	细胞质基质	0.20000	`XP_057784387.1`
5	Chromosome	染色体	0.20000	`XP_057784389.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:21249955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,C7
`Chr8:21250287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C31,C59
`Chr8:21250309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,B54
`Chr8:21251241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr8:21251601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:21252908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784386.1

296 aa

148

296

FANCL_d2

FANCL_d3

FANCL_C

PF18890 FANCL_d2 25-110 aa PF18891 FANCL_d3 112-208 aa PF11793 FANCL_C 216-293 aa

XP_057784387.1

288 aa

144

288

FANCL_d2

FANCL_d3

PF18890 FANCL_d2 25-110 aa PF18891 FANCL_d3 112-192 aa

XP_057784388.1

286 aa

143

286

FANCL_d2

FANCL_d3

FANCL_C

PF18890 FANCL_d2 25-110 aa PF18891 FANCL_d3 112-164 aa PF11793 FANCL_C 206-283 aa

XP_057784389.1

255 aa

128

255

FANCL_d2

FANCL_d3

FANCL_C

PF18890 FANCL_d2 2-69 aa PF18891 FANCL_d3 71-167 aa PF11793 FANCL_C 175-252 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784386.1`	Pfam	`PF18890`	FANCL_d2	Domain	25	110	3.9e-20	72.8	FANCL UBC-like domain 2
`XP_057784386.1`	Pfam	`PF18891`	FANCL_d3	Domain	112	208	2.4e-21	76.4	FANCL UBC-like domain 3
`XP_057784386.1`	Pfam	`PF11793`	FANCL_C	Domain	216	293	4.6e-31	107.6	FANCL C-terminal domain
`XP_057784387.1`	Pfam	`PF18890`	FANCL_d2	Domain	25	110	1.7e-19	70.8	FANCL UBC-like domain 2
`XP_057784387.1`	Pfam	`PF18891`	FANCL_d3	Domain	112	192	2.6e-15	57.1	FANCL UBC-like domain 3
`XP_057784388.1`	Pfam	`PF18890`	FANCL_d2	Domain	25	110	7.1e-20	72.0	FANCL UBC-like domain 2
`XP_057784388.1`	Pfam	`PF18891`	FANCL_d3	Domain	112	164	2.8e-07	31.3	FANCL UBC-like domain 3
`XP_057784388.1`	Pfam	`PF11793`	FANCL_C	Domain	206	283	7.4e-32	110.2	FANCL C-terminal domain
`XP_057784389.1`	Pfam	`PF18890`	FANCL_d2	Domain	2	69	1.1e-13	52.2	FANCL UBC-like domain 2
`XP_057784389.1`	Pfam	`PF18891`	FANCL_d3	Domain	71	167	1.9e-21	76.8	FANCL UBC-like domain 3
`XP_057784389.1`	Pfam	`PF11793`	FANCL_C	Domain	175	252	3.5e-31	108.0	FANCL C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057928405.1
ACATTAGGTAACGGCCCAATAATAGAAAACTTTTCGCGGTAAGAAATTGTGCCATAGGAAGCTCCGCATTCAATTTCCGAGCGACTTGCTCTACTAGTTTTAACTTCTGTCAGAGATAAATTATTTGCTGCGCTTGGATACTAATTTTGCTATCAATTCAGAGATGGAGGTCGGCAGTAAGAAATTCACCGACAAAAATAGATGCCGGGAGCTGGCAATGTCGTCGTCGTTCTGCCGCAGAATATACTCGGAGGTAGAAG...

XM_057928404.1
ACATTAGGTAACGGCCCAATAATAGAAAACTTTTCGCGGTAAGAAATTGTGCCATAGGAAGCTCCGCATTCAATTTCCGAGCGACTTGCTCTACTAGTTTTAACTTCTGTCAGAGATAAATTATTTGCTGCGCTTGGATACTAATTTTGCTATCAATTCAGAGATGGAGGTCGGCAGTAAGAAATTCACCGACAAAAATAGATGCCGGGAGCTGGCAATGTCGTCGTCGTTCTGCCGCAGAATATACTCGGAGGTAGAAG...

CDS

4 records

下载 CDS FASTA

LOC131001811
ATGGAGGTCGGCAGTAAGAAATTCACCGACAAAAATAGATGCCGGGAGCTGGCAATGTCGTCGTCGTTCTGCCGCAGAATATACTCGGAGGTAGAAGAGGTTGGATGGGAGCACCTACTGAAAATGGGAGAAGATCTCACATTTCTTAGGTTTTGTATCATGGACAATAAGAGGAGAGCACATATTCTGGAGATAACTTTGGATAAGACCTATCCAAGGTCTCAACCTTCGGTATCAGCGGATGTGCCTTATAATTCTGA...

Protein

4 records

下载 Protein FASTA

XP_057784386.1
MEVGSKKFTDKNRCRELAMSSSFCRRIYSEVEEVGWEHLLKMGEDLTFLRFCIMDNKRRAHILEITLDKTYPRSQPSVSADVPYNSDLEWSPNSRLRDIVQQFQRHVDKLQDFWSTLDDIDRSLLVLDPKHSHHAVSYRPIKIGNDCCMVLSINVDDPRSLPECRFLGSDTAVNVLRDIWKRKCKEWAREKSFLENLLHIFGNLLPQPSYLQQNEEQVECGICYAQYLPTDDELGAKSGTATDYSCENGNCNRAFHSVCL...

XP_057784387.1
MEVGSKKFTDKNRCRELAMSSSFCRRIYSEVEEVGWEHLLKMGEDLTFLRFCIMDNKRRAHILEITLDKTYPRSQPSVSADVPYNSDLEWSPNSRLRDIVQQFQRHVDKLQDFWSTLDDIDRSLLVLDPKHSHHAVSYRPIKIGNDCCMVLSINVDDPRSLPECRFLGSDTAVNVLRDIWKRKWREKNHFLKIFCIYLAICYHNLRISNRMRSRLNAAFVMLNIFQQMMNLEPRVGLQLIILAKMETAIEHSTVFVLVIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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