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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002291

染色体: Chr08 坐标: 21390780-21399641 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002291
名称SmilChr08G002291
描述putative pentatricopeptide repeat-containing protein At2g01510
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向21390780 - 21399641 / -

ID 对照

NCBI Gene IDLOC131001817
GeneID131001817
locus_tag-
NCBI NameLOC131001817
原始查询SmilChr08G002291

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At2g01510
产物putative pentatricopeptide repeat-containing protein At2g01510
ArabidopsisAT3G02010 (AT3G02010)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821085]
identity=58.3; qcov=0.971; evalue=0; confidence=high
RiceOs01g0101150 (P0672D08.16)
-
identity=51; qcov=0.966; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131001817

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057784396.1
2 Nucleus 细胞核 0.00000 XP_057784396.1
3 Chromosome 染色体 0.00000 XP_057784396.1
4 Centromere 着丝粒 0.00000 XP_057784396.1
5 Chromatin 染色质 0.00000 XP_057784396.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:21394360 C T EMS_canonical_SNV CDS_variant 1 D10
Chr8:21394500 C T EMS_canonical_SNV CDS_variant 1 C52
Chr8:21394823 G A EMS_canonical_SNV CDS_variant 4 B56,B66,B8,B96
Chr8:21394847 G A EMS_canonical_SNV CDS_variant 3 B41,C11,C69
Chr8:21395263 C T EMS_canonical_SNV CDS_variant 5 B1,B12,B60,B87,C85
Chr8:21395280 C T EMS_canonical_SNV CDS_variant 5 B138,B47,B55,C53,C61
Chr8:21395727 C T EMS_canonical_SNV CDS_variant 4 B56,B66,B8,B96
Chr8:21395866 C T EMS_canonical_SNV CDS_variant 1 C57
Chr8:21395974 G A EMS_canonical_SNV CDS_variant 4 B56,B66,B8,B96
Chr8:21396654 C T EMS_canonical_SNV CDS_variant 3 A18,B13,C84
Chr8:21396709 G A EMS_canonical_SNV CDS_variant 2 B42,B43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784396.1
815 aa
N
1
408
815
PPR
PPR
PPR_2
PPR
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR
E_motif
PPR
DYW_deaminase
C
PF01535 PPR 45-72 aa PF01535 PPR 75-101 aa PF13041 PPR_2 103-149 aa PF01535 PPR 105-134 aa PF01535 PPR 177-202 aa PF12854 PPR_1 203-232 aa PF13041 PPR_2 203-251 aa PF13812 PPR_3 204-252 aa PF01535 PPR 206-236 aa PF01535 PPR 279-306 aa PF01535 PPR 307-333 aa PF01535 PPR 380-402 aa PF13041 PPR_2 406-451 aa PF01535 PPR 408-438 aa PF01535 PPR 481-507 aa PF13812 PPR_3 507-553 aa PF13041 PPR_2 507-554 aa PF01535 PPR 509-539 aa PF01535 PPR 544-570 aa PF01535 PPR 583-605 aa PF20431 E_motif 624-687 aa PF01535 PPR 648-677 aa PF14432 DYW_deaminase 723-815 aa
XP_057784397.1
815 aa
N
1
408
815
PPR
PPR
PPR_2
PPR
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR
E_motif
PPR
DYW_deaminase
C
PF01535 PPR 45-72 aa PF01535 PPR 75-101 aa PF13041 PPR_2 103-149 aa PF01535 PPR 105-134 aa PF01535 PPR 177-202 aa PF12854 PPR_1 203-232 aa PF13041 PPR_2 203-251 aa PF13812 PPR_3 204-252 aa PF01535 PPR 206-236 aa PF01535 PPR 279-306 aa PF01535 PPR 307-333 aa PF01535 PPR 380-402 aa PF13041 PPR_2 406-451 aa PF01535 PPR 408-438 aa PF01535 PPR 481-507 aa PF13812 PPR_3 507-553 aa PF13041 PPR_2 507-554 aa PF01535 PPR 509-539 aa PF01535 PPR 544-570 aa PF01535 PPR 583-605 aa PF20431 E_motif 624-687 aa PF01535 PPR 648-677 aa PF14432 DYW_deaminase 723-815 aa
XP_057784398.1
815 aa
N
1
408
815
PPR
PPR
PPR_2
PPR
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR
PPR
PPR
PPR_2
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR
E_motif
PPR
DYW_deaminase
C
PF01535 PPR 45-72 aa PF01535 PPR 75-101 aa PF13041 PPR_2 103-149 aa PF01535 PPR 105-134 aa PF01535 PPR 177-202 aa PF12854 PPR_1 203-232 aa PF13041 PPR_2 203-251 aa PF13812 PPR_3 204-252 aa PF01535 PPR 206-236 aa PF01535 PPR 279-306 aa PF01535 PPR 307-333 aa PF01535 PPR 380-402 aa PF13041 PPR_2 406-451 aa PF01535 PPR 408-438 aa PF01535 PPR 481-507 aa PF13812 PPR_3 507-553 aa PF13041 PPR_2 507-554 aa PF01535 PPR 509-539 aa PF01535 PPR 544-570 aa PF01535 PPR 583-605 aa PF20431 E_motif 624-687 aa PF01535 PPR 648-677 aa PF14432 DYW_deaminase 723-815 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784396.1 Pfam PF01535 PPR Repeat 45 72 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF01535 PPR Repeat 75 101 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF13041 PPR_2 Repeat 103 149 4e-92 302.9 PPR repeat family
XP_057784396.1 Pfam PF01535 PPR Repeat 105 134 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF01535 PPR Repeat 177 202 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF12854 PPR_1 Repeat 203 232 2.1e-53 178.5 PPR repeat
XP_057784396.1 Pfam PF13041 PPR_2 Repeat 203 251 4e-92 302.9 PPR repeat family
XP_057784396.1 Pfam PF13812 PPR_3 Repeat 204 252 1.5e-30 105.8 Pentatricopeptide repeat domain
XP_057784396.1 Pfam PF01535 PPR Repeat 206 236 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF01535 PPR Repeat 279 306 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF01535 PPR Repeat 307 333 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF01535 PPR Repeat 380 402 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF13041 PPR_2 Repeat 406 451 4e-92 302.9 PPR repeat family
XP_057784396.1 Pfam PF01535 PPR Repeat 408 438 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF01535 PPR Repeat 481 507 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF13812 PPR_3 Repeat 507 553 1.5e-30 105.8 Pentatricopeptide repeat domain
XP_057784396.1 Pfam PF13041 PPR_2 Repeat 507 554 4e-92 302.9 PPR repeat family
XP_057784396.1 Pfam PF01535 PPR Repeat 509 539 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF01535 PPR Repeat 544 570 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF01535 PPR Repeat 583 605 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF20431 E_motif Repeat 624 687 1.1e-14 55.1 E motif
XP_057784396.1 Pfam PF01535 PPR Repeat 648 677 2e-83 269.7 PPR repeat
XP_057784396.1 Pfam PF14432 DYW_deaminase Domain 723 815 9.5e-39 131.9 DYW family of nucleic acid deaminases
XP_057784397.1 Pfam PF01535 PPR Repeat 45 72 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF01535 PPR Repeat 75 101 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF13041 PPR_2 Repeat 103 149 4e-92 302.9 PPR repeat family
XP_057784397.1 Pfam PF01535 PPR Repeat 105 134 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF01535 PPR Repeat 177 202 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF12854 PPR_1 Repeat 203 232 2.1e-53 178.5 PPR repeat
XP_057784397.1 Pfam PF13041 PPR_2 Repeat 203 251 4e-92 302.9 PPR repeat family
XP_057784397.1 Pfam PF13812 PPR_3 Repeat 204 252 1.5e-30 105.8 Pentatricopeptide repeat domain
XP_057784397.1 Pfam PF01535 PPR Repeat 206 236 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF01535 PPR Repeat 279 306 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF01535 PPR Repeat 307 333 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF01535 PPR Repeat 380 402 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF13041 PPR_2 Repeat 406 451 4e-92 302.9 PPR repeat family
XP_057784397.1 Pfam PF01535 PPR Repeat 408 438 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF01535 PPR Repeat 481 507 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF13812 PPR_3 Repeat 507 553 1.5e-30 105.8 Pentatricopeptide repeat domain
XP_057784397.1 Pfam PF13041 PPR_2 Repeat 507 554 4e-92 302.9 PPR repeat family
XP_057784397.1 Pfam PF01535 PPR Repeat 509 539 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF01535 PPR Repeat 544 570 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF01535 PPR Repeat 583 605 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF20431 E_motif Repeat 624 687 1.1e-14 55.1 E motif
XP_057784397.1 Pfam PF01535 PPR Repeat 648 677 2e-83 269.7 PPR repeat
XP_057784397.1 Pfam PF14432 DYW_deaminase Domain 723 815 9.5e-39 131.9 DYW family of nucleic acid deaminases
XP_057784398.1 Pfam PF01535 PPR Repeat 45 72 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF01535 PPR Repeat 75 101 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF13041 PPR_2 Repeat 103 149 4e-92 302.9 PPR repeat family
XP_057784398.1 Pfam PF01535 PPR Repeat 105 134 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF01535 PPR Repeat 177 202 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF12854 PPR_1 Repeat 203 232 2.1e-53 178.5 PPR repeat
XP_057784398.1 Pfam PF13041 PPR_2 Repeat 203 251 4e-92 302.9 PPR repeat family
XP_057784398.1 Pfam PF13812 PPR_3 Repeat 204 252 1.5e-30 105.8 Pentatricopeptide repeat domain
XP_057784398.1 Pfam PF01535 PPR Repeat 206 236 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF01535 PPR Repeat 279 306 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF01535 PPR Repeat 307 333 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF01535 PPR Repeat 380 402 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF13041 PPR_2 Repeat 406 451 4e-92 302.9 PPR repeat family
XP_057784398.1 Pfam PF01535 PPR Repeat 408 438 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF01535 PPR Repeat 481 507 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF13812 PPR_3 Repeat 507 553 1.5e-30 105.8 Pentatricopeptide repeat domain
XP_057784398.1 Pfam PF13041 PPR_2 Repeat 507 554 4e-92 302.9 PPR repeat family
XP_057784398.1 Pfam PF01535 PPR Repeat 509 539 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF01535 PPR Repeat 544 570 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF01535 PPR Repeat 583 605 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF20431 E_motif Repeat 624 687 1.1e-14 55.1 E motif
XP_057784398.1 Pfam PF01535 PPR Repeat 648 677 2e-83 269.7 PPR repeat
XP_057784398.1 Pfam PF14432 DYW_deaminase Domain 723 815 9.5e-39 131.9 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057928414.1
CTCAAAGTGACATTAAATTGGGCACCAATGGAGTATTTTTTTTATGATTAACTCTTATAATATTACCCCTCCAATAATTTTTTGATTTAATTGACTTTGCACGAGGAAAATGAAGGAACGTGGAGCTAGATGAGTATGTGAGGAAGAAGGAGATAAAGCGATAAACATGACAAAGATTCGAATAGGAGAACGAGACGATGAAAACGTCGCTGAGCGGCATGATCCAACGGGTGAAGGCGGCGACGAAGGACATAGAGTCG...
XM_057928413.1
TAACTCTTATAATATTACCCCTCCAATAATTTTTTGATTTAATTGACTTTGCACGAGGAAAATGAAGGAACGTGGAGCTAGATGAGTATGTGAGGAAGAAGGAGATAAAGCGATAAACATGACAAAGATTCGAATAGGAGAACGAGACGATGAAAACGTCGCTGAGCGGCATGATCCAACGGGTGAAGGCGGCGACGAAGGACATAGAGTCGTGGTCTGTGGAGAGAGAGAGGAGGAAGAAACAATGAAGATGGTTTGCA...

CDS

3 records

下载 CDS FASTA
LOC131001817
ATGAAAAACTCAAGGGCTCTGAGCCCATGGAATGGAACCGCCGTGATTACAAAGCGATTCTACTCTACAAATAGCTCGAATTTGGTTGATGCTCGAGCCATCAAGACGGGCTTTGATTTAGAGATCAGTCGTTACAACTTCCTGCTCAAGAATTTGGTTGCACGGTGCCAGCTCTCCGAGGCAAGCAAACTGTTCGATGAAATGCCTCGCAGAAACACCTGCTCGGTGAACATGATGATCTCCTGTCATGTCAAGTCAGG...
LOC131001817
ATGAAAAACTCAAGGGCTCTGAGCCCATGGAATGGAACCGCCGTGATTACAAAGCGATTCTACTCTACAAATAGCTCGAATTTGGTTGATGCTCGAGCCATCAAGACGGGCTTTGATTTAGAGATCAGTCGTTACAACTTCCTGCTCAAGAATTTGGTTGCACGGTGCCAGCTCTCCGAGGCAAGCAAACTGTTCGATGAAATGCCTCGCAGAAACACCTGCTCGGTGAACATGATGATCTCCTGTCATGTCAAGTCAGG...

Protein

3 records

下载 Protein FASTA
XP_057784396.1
MKNSRALSPWNGTAVITKRFYSTNSSNLVDARAIKTGFDLEISRYNFLLKNLVARCQLSEASKLFDEMPRRNTCSVNMMISCHVKSGNLSYARELFDGMSDRTAVSWTILIGGYARSNRPMDAFSLYAEMFTSGMKPDHVTVTTLLSSCNETTTRNDVHQVHAHITKFGFGCDLGVCNSLIDSYSKSRNLGLAFQLFKEIVTRDTITYNTLITGYAKEGIREAAVKLFSEMQHFGFRPSDFTFAALLHACAGMGGATLGQ...
XP_057784397.1
MKNSRALSPWNGTAVITKRFYSTNSSNLVDARAIKTGFDLEISRYNFLLKNLVARCQLSEASKLFDEMPRRNTCSVNMMISCHVKSGNLSYARELFDGMSDRTAVSWTILIGGYARSNRPMDAFSLYAEMFTSGMKPDHVTVTTLLSSCNETTTRNDVHQVHAHITKFGFGCDLGVCNSLIDSYSKSRNLGLAFQLFKEIVTRDTITYNTLITGYAKEGIREAAVKLFSEMQHFGFRPSDFTFAALLHACAGMGGATLGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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