当前解析结果
SmilChr08G002317| 统一新 Gene ID | SmilChr08G002317 |
|---|---|
| 名称 | SmilChr08G002317 |
| 描述 | probable amino-acid acetyltransferase NAGS2, chloroplastic |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 21835443 - 21844429 / + |
| NCBI Gene ID | LOC131001839 |
|---|---|
| GeneID | 131001839 |
| locus_tag | - |
| NCBI Name | LOC131001839 |
| 原始查询 | SmilChr08G002317 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable amino-acid acetyltransferase NAGS2, chloroplastic |
| 产物 | probable amino-acid acetyltransferase NAGS2%2C chloroplastic |
| Arabidopsis | AT4G37670 (NAGS2)N-acetyl-l-glutamate synthase 2 [Source:NCBI gene (formerly Entrezgene);Acc:829921] identity=73; qcov=1.01; evalue=0; confidence=high |
| Rice | Os07g0585600- identity=66.6; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004042 (L-glutamate N-acetyltransferase activity, acting on acetyl-CoA as donor); GO:0005737 (cytoplasm); GO:0006526 (L-arginine biosynthetic process) |
| KEGG | smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00583 (Acetyltransf_1); PF00696 (AA_kinase); PF13508 (Acetyltransf_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001839 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057784431.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057784434.1 |
| 3 | Cytoplasm | 细胞质 | 1.00000 | XP_057784435.1 |
| 4 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057784431.1 |
| 5 | Nucleus | 细胞核 | 0.60000 | XP_057784434.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:21835631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,A3,B129,C21,C44 |
Chr8:21835683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr8:21839152 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr8:21839235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B7,B80 |
Chr8:21839272 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr8:21839274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:21839314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr8:21839349 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,C1 |
Chr8:21839764 |
ACT |
A |
2bp_deletion | frameshift_variant | 19 | A10,A7,B121,B133,B135,B29,B32,B63,B71,B78,B79,B80,B81,C33,C35,C51,C57,C75,C80 |
Chr8:21839789 |
C |
T |
EMS_canonical_SNV | stop_gained | 26 | A1,A11,A3,B105,B107,B118,B128,B129,B132,B139,B16,B18,B41,B44,B45,B59,B65,B72,B73,C21,C44,C70,C8,C83,C86,D6 |
Chr8:21840020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:21841104 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784431.1PF00696
AA_kinase 111-308 aa
PF00583
Acetyltransf_1 475-545 aa
PF13508
Acetyltransf_7 479-556 aa
XP_057784432.1PF00696
AA_kinase 80-287 aa
PF00583
Acetyltransf_1 454-524 aa
PF13508
Acetyltransf_7 458-535 aa
XP_057784433.1PF00696
AA_kinase 111-308 aa
XP_057784434.1PF00696
AA_kinase 88-183 aa
PF00583
Acetyltransf_1 349-420 aa
PF13508
Acetyltransf_7 354-431 aa
XP_057784435.1PF00696
AA_kinase 38-133 aa
PF00583
Acetyltransf_1 300-370 aa
PF13508
Acetyltransf_7 304-381 aa
XP_057784436.1PF00696
AA_kinase 38-133 aa
PF00583
Acetyltransf_1 300-370 aa
PF13508
Acetyltransf_7 304-381 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784431.1 |
Pfam | PF00696 |
AA_kinase | Family | 111 | 308 | 3.1e-10 | 40.9 | Amino acid kinase family |
XP_057784431.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 475 | 545 | 4.7e-15 | 56.6 | Acetyltransferase (GNAT) family |
XP_057784431.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 479 | 556 | 6.3e-13 | 49.6 | Acetyltransferase (GNAT) domain |
XP_057784432.1 |
Pfam | PF00696 |
AA_kinase | Family | 80 | 287 | 8.6e-11 | 42.7 | Amino acid kinase family |
XP_057784432.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 454 | 524 | 5e-14 | 53.3 | Acetyltransferase (GNAT) family |
XP_057784432.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 458 | 535 | 8.6e-13 | 49.2 | Acetyltransferase (GNAT) domain |
XP_057784433.1 |
Pfam | PF00696 |
AA_kinase | Family | 111 | 308 | 1.9e-10 | 41.6 | Amino acid kinase family |
XP_057784434.1 |
Pfam | PF00696 |
AA_kinase | Family | 88 | 183 | 1.1e-06 | 29.3 | Amino acid kinase family |
XP_057784434.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 349 | 420 | 3e-14 | 54.0 | Acetyltransferase (GNAT) family |
XP_057784434.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 354 | 431 | 5.7e-13 | 49.8 | Acetyltransferase (GNAT) domain |
XP_057784435.1 |
Pfam | PF00696 |
AA_kinase | Family | 38 | 133 | 9.6e-07 | 29.5 | Amino acid kinase family |
XP_057784435.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 300 | 370 | 2.2e-14 | 54.4 | Acetyltransferase (GNAT) family |
XP_057784435.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 304 | 381 | 4.3e-13 | 50.2 | Acetyltransferase (GNAT) domain |
XP_057784436.1 |
Pfam | PF00696 |
AA_kinase | Family | 38 | 133 | 9.6e-07 | 29.5 | Amino acid kinase family |
XP_057784436.1 |
Pfam | PF00583 |
Acetyltransf_1 | Family | 300 | 370 | 2.2e-14 | 54.4 | Acetyltransferase (GNAT) family |
XP_057784436.1 |
Pfam | PF13508 |
Acetyltransf_7 | Domain | 304 | 381 | 4.3e-13 | 50.2 | Acetyltransferase (GNAT) domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。