当前解析结果
SmilChr08G002333| 统一新 Gene ID | SmilChr08G002333 |
|---|---|
| 名称 | SmilChr08G002333 |
| 描述 | calcium-transporting ATPase 2, plasma membrane-type-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 21972267 - 21976413 / + |
| NCBI Gene ID | LOC131001854 |
|---|---|
| GeneID | 131001854 |
| locus_tag | - |
| NCBI Name | LOC131001854 |
| 原始查询 | SmilChr08G002333 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcium-transporting ATPase 2, plasma membrane-type-like |
| 产物 | calcium-transporting ATPase 2%2C plasma membrane-type-like |
| Arabidopsis | AT4G37640 (ACA2)calcium ATPase 2 [Source:NCBI gene (formerly Entrezgene);Acc:829918] identity=79.3; qcov=0.969; evalue=0; confidence=high |
| Rice | Os03g0203700 (osACA1)- identity=76.5; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0005388 (P-type calcium transporter activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0070588 (calcium ion transmembrane transport) |
| KEGG | - |
| Pfam | PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF08282 (Hydrolase_3); PF12515 (CaATP_NAI); PF13246 (Cation_ATPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001854 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057784460.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057784460.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057784460.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057784460.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057784460.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:21972549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B16,B45,B59 |
Chr8:21972633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:21972676 |
GT |
G |
1bp_deletion | frameshift_variant | 2 | C71,D4 |
Chr8:21972676 |
GT |
G |
1bp_deletion | CDS_variant | 2 | C71,D4 |
Chr8:21972903 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr8:21972969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B16,B45,B59 |
Chr8:21972978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B36,B48,C1 |
Chr8:21972987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B47,B55,C61 |
Chr8:21972998 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:21973004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr8:21973026 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,C61 |
Chr8:21973045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784460.1PF12515
CaATP_NAI 6-49 aa
PF00690
Cation_ATPase_N 119-187 aa
PF00122
E1-E2_ATPase 238-336 aa
PF13246
Cation_ATPase 518-664 aa
PF00702
Hydrolase 612-771 aa
PF08282
Hydrolase_3 741-799 aa
PF00689
Cation_ATPase_C 842-1015 aa
XP_057784461.1PF00690
Cation_ATPase_N 68-136 aa
PF00122
E1-E2_ATPase 187-285 aa
PF13246
Cation_ATPase 467-613 aa
PF00702
Hydrolase 553-720 aa
PF08282
Hydrolase_3 690-748 aa
PF00689
Cation_ATPase_C 791-964 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784460.1 |
Pfam | PF12515 |
CaATP_NAI | Family | 6 | 49 | 2.9e-16 | 59.4 | Ca2+-ATPase N terminal autoinhibitory domain |
XP_057784460.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 119 | 187 | 3.4e-12 | 46.5 | Cation transporter/ATPase, N-terminus |
XP_057784460.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 238 | 336 | 5e-21 | 75.1 | P-type ATPase actuator domain |
XP_057784460.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 518 | 664 | 5.2e-34 | 118.3 | P-type ATPase, cytoplasmic domain N |
XP_057784460.1 |
Pfam | PF00702 |
Hydrolase | Domain | 612 | 771 | 2.8e-12 | 48.2 | haloacid dehalogenase-like hydrolase |
XP_057784460.1 |
Pfam | PF08282 |
Hydrolase_3 | Domain | 741 | 799 | 7.5e-05 | 23.3 | haloacid dehalogenase-like hydrolase |
XP_057784460.1 |
Pfam | PF00689 |
Cation_ATPase_C | Family | 842 | 1015 | 8.5e-42 | 143.6 | Cation transporting ATPase, C-terminus |
XP_057784461.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 68 | 136 | 3.3e-12 | 46.6 | Cation transporter/ATPase, N-terminus |
XP_057784461.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 187 | 285 | 4.7e-21 | 75.2 | P-type ATPase actuator domain |
XP_057784461.1 |
Pfam | PF13246 |
Cation_ATPase | Family | 467 | 613 | 5e-34 | 118.4 | P-type ATPase, cytoplasmic domain N |
XP_057784461.1 |
Pfam | PF00702 |
Hydrolase | Domain | 553 | 720 | 3.5e-12 | 47.8 | haloacid dehalogenase-like hydrolase |
XP_057784461.1 |
Pfam | PF08282 |
Hydrolase_3 | Domain | 690 | 748 | 7e-05 | 23.4 | haloacid dehalogenase-like hydrolase |
XP_057784461.1 |
Pfam | PF00689 |
Cation_ATPase_C | Family | 791 | 964 | 7.8e-42 | 143.7 | Cation transporting ATPase, C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。