当前解析结果
SmilChr08G002337| 统一新 Gene ID | SmilChr08G002337 |
|---|---|
| 名称 | SmilChr08G002337 |
| 描述 | phospholipase A I |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 22047996 - 22057664 / + |
| NCBI Gene ID | LOC131001856 |
|---|---|
| GeneID | 131001856 |
| locus_tag | - |
| NCBI Name | LOC131001856 |
| 原始查询 | SmilChr08G002337 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phospholipase A I |
| 产物 | phospholipase A I |
| Arabidopsis | AT1G61850 (AT1G61850)phospholipase A I-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842482] identity=67.4; qcov=1.01; evalue=0; confidence=high |
| Rice | Os07g0520900 (OspPLAI)- identity=66.9; qcov=0.913; evalue=0; confidence=high |
| GO | GO:0004620 (glycerophospholipase activity); GO:0005515 (protein binding); GO:0006631 (fatty acid metabolic process); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00514 (Arm); PF01734 (Patatin); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001856 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057784463.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057784463.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057784463.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057784463.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057784463.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:22048485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:22048734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C13 |
Chr8:22048863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C13 |
Chr8:22048962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr8:22049009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr8:22049064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr8:22049700 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B138,B47,B55,C61 |
Chr8:22050807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B36,C1 |
Chr8:22051032 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B124 |
Chr8:22051480 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:22051653 |
C |
T |
EMS_canonical_SNV | stop_gained | 92 | A1,A14,A15,A16,A19,A21,A22,A23,A24,A25,A6,B1,B10,B100,B101,B103,B105,B107,B11,B114,B117,B121,B127,B130,B133,B135,B138,B139,B140,B16,B17,B19,B2,B21,B24,B3,B30,B31,B34,B36,B38,B41,B50,B57,B61,B66,B67,B68,B77,B83,B84,B97,C16,C19,C25,C28,C34,C35,C36,C37,C38,C4,C40,C41,C45,C47,C49,C51,C52,C54,C55,C58,C6,C60,C63,C64,C66,C67,C68,C69,C7,C76,C79,C8,C83,C86,D11,D4,D5,D6,D7,D8 |
Chr8:22051737 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784463.1PF13855
LRR_8 216-273 aa
PF00514
Arm 377-415 aa
PF01734
Patatin 561-803 aa
XP_057784464.1PF13855
LRR_8 216-273 aa
PF00514
Arm 377-415 aa
PF01734
Patatin 561-803 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784463.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 216 | 273 | 2.2e-10 | 40.9 | Leucine rich repeat |
XP_057784463.1 |
Pfam | PF00514 |
Arm | Repeat | 377 | 415 | 3.1e-10 | 40.4 | Armadillo/beta-catenin-like repeat |
XP_057784463.1 |
Pfam | PF01734 |
Patatin | Domain | 561 | 803 | 1.9e-19 | 71.3 | Patatin-like phospholipase |
XP_057784464.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 216 | 273 | 2.2e-10 | 40.9 | Leucine rich repeat |
XP_057784464.1 |
Pfam | PF00514 |
Arm | Repeat | 377 | 415 | 3.1e-10 | 40.4 | Armadillo/beta-catenin-like repeat |
XP_057784464.1 |
Pfam | PF01734 |
Patatin | Domain | 561 | 803 | 1.9e-19 | 71.3 | Patatin-like phospholipase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。