Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr08G002341`

Chromosome: Chr08 Coordinates: 22092171-22096897 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr08G002341`
Name	SmilChr08G002341
Description	formin-like protein 6
Chromosome / SeqID	Chr08 / NC_080394.1
Coordinates and Strand	22092171 - 22096897 / `-`

ID Mapping

NCBI Gene ID	`LOC131001861`
GeneID	`131001861`
locus_tag	`-`
NCBI Name	`LOC131001861`
Original query	`SmilChr08G002341`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	formin-like protein 6
Product	formin-like protein 6
Arabidopsis	`AT5G67470` (FH6) formin homolog 6 [Source:NCBI gene (formerly Entrezgene);Acc:836883] identity=56.1; qcov=1.02; evalue=0; confidence=high
Rice	`Os03g0204100` (OsFH8) - identity=68.2; qcov=0.513; evalue=0; confidence=medium
GO	GO:0030036 (actin cytoskeleton organization); GO:0045010 (actin nucleation); GO:0051015 (actin filament binding)
KEGG	-
Pfam	PF02181 (FH2)
InterPro	-
eggNOG	-
NR	GeneID:131001861

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057784470.1`
2	Nucleus	细胞核	0.00000	`XP_057784470.1`
3	Chromosome	染色体	0.00000	`XP_057784470.1`
4	Centromere	着丝粒	0.00000	`XP_057784470.1`
5	Chromatin	染色质	0.00000	`XP_057784470.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr8:22092911`	`CCT`	`C`	2bp_deletion	frameshift_variant	2	B123,B14
`Chr8:22092911`	`CCT`	`C`	2bp_deletion	CDS_variant	2	B123,B14
`Chr8:22092969`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B39,C14,C65
`Chr8:22093095`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr8:22093316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr8:22093624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B113,B136,B69,C31,C59
`Chr8:22095024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B47,B55,C61
`Chr8:22095761`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B16,B45,B59
`Chr8:22095899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C31,C59
`Chr8:22095921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr8:22095950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C31,C59
`Chr8:22096262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B40,C28

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Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057784470.1

858 aa

429

858

FH2

PF02181 FH2 418-809 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057784470.1`	Pfam	`PF02181`	FH2	Family	418	809	3.3e-118	395.8	Formin Homology 2 Domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057928487.1
ATCCATACCCCATGTGACTTTCGCATAAATCAATCAATTTTATTTCATTTTTCTAATACCACATATATAATTCTCTTACTCAAACAACATTATTCTACTTCCTTAAATTCAGTACTTCCTAAAATCGTAAAAACACTCGGAATATTTATTTATACGGAAAGGAAAAGCGCGGCTACTGCTGACGAAATAGCATCTAGATCTTGCACCACTCCGAAGCTTCTCCTTTACAGCCACTCTCTCTCTCTCTCAAGTTAGGAACA...

CDS

1 records

Download CDS FASTA

LOC131001861
ATGAGACCTAATTATATCATTACCATTTTCTTGATCCTATCATTTATTGCAGACTCCAAATTCATAGGTGAAGAGAAAAACAACAGGAGGATTCTTCACCAACCACTCTTTCCATACACTTCATCTCCGCCTCCTCCCGAATCACTGCCGCCGCCTCCGGTTGTGCCTTCAACTCCAGACCAAAACCAGCCATTCTTCCACGAGCTTCCAAATGGACCCCCGGTGGATCAGGGGCAGCAAACGCCACCATCGCCGCCCGG...

Protein

1 records

Download Protein FASTA

XP_057784470.1
MRPNYIITIFLILSFIADSKFIGEEKNNRRILHQPLFPYTSSPPPPESLPPPPVVPSTPDQNQPFFHELPNGPPVDQGQQTPPSPPGSSSSTAVATPAAPRPTNSIKKLGIAVSSAMLSLAVVSAVAFLLYKRRIKHRDDSQKLVAGNSQRMNEEARMPPSNFLYIGTVEPSATSIASEANDASASPYRKLNSGKRSSRYRPSPDLQPLPPLTKPPLPPPPSINSPPPMSSSDDESHDTNFYTPQGSSMSNESPSSRHSY...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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