Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002353

染色体: Chr08 坐标: 22266656-22270406 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002353
名称SmilChr08G002353
描述stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向22266656 - 22270406 / +

ID 对照

NCBI Gene IDLOC131001870
GeneID131001870
locus_tag-
NCBI NameLOC131001870
原始查询SmilChr08G002353

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic
产物stearoyl-[acyl-carrier-protein] 9-desaturase%2C chloroplastic
ArabidopsisAT2G43710 (SSI2)
Plant stearoyl-acyl-carrier-protein desaturase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818973]
identity=82.3; qcov=1; evalue=0; confidence=high
RiceOs01g0919900 (OsSSI2)
-
identity=79.6; qcov=1; evalue=0; confidence=high
GOGO:0006633 (fatty acid biosynthetic process); GO:0009570 (chloroplast stroma); GO:0045300 (stearoyl-[ACP] desaturase activity)
KEGGsmil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01040 (Biosynthesis of unsaturated fatty acids - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
PfamPF03405 (FA_desaturase_2)
InterPro-
eggNOG-
NRGeneID:131001870

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057784483.1
2 Cytoplasm 细胞质 1.00000 XP_057784484.1
3 Cytosol 细胞质基质 1.00000 XP_057784484.1
4 Chloroplast stroma 叶绿体基质 0.60000 XP_057784483.1
5 Nucleus 细胞核 0.20000 XP_057784484.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:22267075 C T EMS_canonical_SNV CDS_variant 1 B17
Chr8:22269107 G A EMS_canonical_SNV CDS_variant 1 B107
Chr8:22269127 C T EMS_canonical_SNV CDS_variant 1 B36
Chr8:22269199 G A EMS_canonical_SNV CDS_variant 1 B36
Chr8:22269290 G A EMS_canonical_SNV CDS_variant 1 C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057784483.1
389 aa
N
1
194
389
FA_desaturase_2
C
PF03405 FA_desaturase_2 59-383 aa
XP_057784484.1
334 aa
N
1
167
334
FA_desaturase_2
C
PF03405 FA_desaturase_2 4-328 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784483.1 Pfam PF03405 FA_desaturase_2 Domain 59 383 1.2e-158 527.9 Fatty acid desaturase
XP_057784484.1 Pfam PF03405 FA_desaturase_2 Domain 4 328 6.7e-159 528.7 Fatty acid desaturase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057928500.1
TTACTGGAATGTCCCACACAAATACACGTATACAGTTTATACGTATAAACAGTTTATTGAAAGAATGATAGGAATCATCGCCAGCTGCAGGAAATTGTCAAGTAGCAATCACAAACCTGTTTGCCATATCAAAAACTATGGGCTTTTACTGAATTTGGAGGCCAAACATTTAACCCAAAATTAGCTTTGTACTATCTTTTCAGCTCTTCGCTTGTTTTCTTGCCCTCCTCACTCCCCTGTATTTAACTCTGCCTTTCCAC...
XM_057928501.1
GGGATCTTATGGTTGTCTTTCTGGCTACCTACAGAAGATGGAAGATGCTCCTAGGTAGAGGTCAAGCACATGTAGCTTATATTTTTACAGTCTCATTCTCTTAGCATGGGATTAATTTCAAGAATTTTAGGCTTTGTGACATTGTGTTAATCGGTTAATTTTATTTTATACTTATGCAGTAATTTTGTGTTGAAATATGTAATTCCTGTTGTGGAGCAATGTGGCCTACTCGATTTAAGAACTGACCATAATTCAAATTA...

CDS

2 records

下载 CDS FASTA
LOC131001870
ATGGCGCTGAGGTTCAGCTTCGTTCCTACCAAGATCCCAGCTTTTCCTGGTTCTGAGCTCAGATCTCACAGGGTTTCCATGGCCTCAACTCTGCATTCTCCCTCAACAGAGGCTAAAAAGGCATTCACTCCACCACGAGAAGTGCATGTGCAAGTGACCCATTCCATGCCCCAAGAAAAGATCGAGATCTTTAACTCACTTCACGACTGGGCTGAGAATAATATCTTGGTGCTCCTCAAGCACGTCGAGAAGTCCTGGCA...
LOC131001870
ATGCCCCAAGAAAAGATCGAGATCTTTAACTCACTTCACGACTGGGCTGAGAATAATATCTTGGTGCTCCTCAAGCACGTCGAGAAGTCCTGGCAGCCTACTGATTTTCTGCCTGATCCTGCATCAGAAGGCTTCCATGAGCAGGTGAAGGAGCTCAGGGAGAGGTGCAGGGAAATCCCCGATGACTATTTTGTGGTTTTGGTTGGCGATATGATCACGGAGGAAGCACTCCCGACTTATCAGACGATGATCAACACTCT...

Protein

2 records

下载 Protein FASTA
XP_057784483.1
MALRFSFVPTKIPAFPGSELRSHRVSMASTLHSPSTEAKKAFTPPREVHVQVTHSMPQEKIEIFNSLHDWAENNILVLLKHVEKSWQPTDFLPDPASEGFHEQVKELRERCREIPDDYFVVLVGDMITEEALPTYQTMINTLDAVRDETGASQTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFVSHGNTARHAKEHGDIKLAQICGTIAADEKRHETAY...
XP_057784484.1
MPQEKIEIFNSLHDWAENNILVLLKHVEKSWQPTDFLPDPASEGFHEQVKELRERCREIPDDYFVVLVGDMITEEALPTYQTMINTLDAVRDETGASQTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFVSHGNTARHAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEVDPDGAVLSLADMMRKKITMPAHLMYDGREDSLFENFSAVAQRLGV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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