Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002360`

染色体: Chr08 坐标: 22362336-22369839 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002360`
名称	SmilChr08G002360
描述	acetolactate synthase small subunit 2, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	22362336 - 22369839 / `+`

ID 对照

NCBI Gene ID	`LOC131001882`
GeneID	`131001882`
locus_tag	`-`
NCBI Name	`LOC131001882`
原始查询	`SmilChr08G002360`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acetolactate synthase small subunit 2, chloroplastic-like
产物	acetolactate synthase small subunit 2%2C chloroplastic-like
Arabidopsis	`AT5G16290` (VAT1) VALINE-TOLERANT 1 [Source:NCBI gene (formerly Entrezgene);Acc:831490] identity=71.5; qcov=0.855; evalue=0; confidence=high
Rice	`Os02g0608600` - identity=70.7; qcov=0.65; evalue=1.52e-171; confidence=high
GO	GO:0003984 (acetolactate synthase activity); GO:0005829 (cytosol); GO:0009097 (GO:0009097); GO:0009099 (L-valine biosynthetic process); GO:1990610 (acetolactate synthase regulator activity)
KEGG	smil00290 (Valine, leucine and isoleucine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00650 (Butanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil00660 (C5-Branched dibasic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01842 (ACT); PF10369 (ALS_ss_C); PF13710 (ACT_5); PF22629 (ACT_AHAS_ss)
InterPro	-
eggNOG	-
NR	GeneID:131001882

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057784494.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057784494.1`
3	Nucleus	细胞核	0.00000	`XP_057784494.1`
4	Chromosome	染色体	0.00000	`XP_057784494.1`
5	Centromere	着丝粒	0.00000	`XP_057784494.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:22362371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:22362444`	`G`	`GAT`	2bp_insertion	frameshift_variant	2	D10,D11
`Chr8:22362444`	`G`	`GAT`	2bp_insertion	CDS_variant	2	D10,D11
`Chr8:22362689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B7,B80
`Chr8:22362699`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C85
`Chr8:22362699`	`TC`	`T`	1bp_deletion	CDS_variant	1	C85
`Chr8:22363288`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:22365821`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:22367808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr8:22368360`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,C49,C71,C82
`Chr8:22368374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:22369213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B104,C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784494.1

558 aa

279

558

ACT

ACT_AHAS_ss

ACT_5

ALS_ss_C

ACT

ACT_AHAS_ss

ACT_5

ALS_ss_C

PF01842 ACT 121-184 aa PF22629 ACT_AHAS_ss 123-188 aa PF13710 ACT_5 131-189 aa PF10369 ALS_ss_C 200-282 aa PF01842 ACT 365-425 aa PF22629 ACT_AHAS_ss 367-433 aa PF13710 ACT_5 374-435 aa PF10369 ALS_ss_C 446-508 aa

XP_057784495.1

549 aa

274

549

ACT

ACT_AHAS_ss

ACT_5

ALS_ss_C

ACT

ACT_AHAS_ss

ACT_5

ALS_ss_C

PF01842 ACT 121-184 aa PF22629 ACT_AHAS_ss 123-188 aa PF13710 ACT_5 131-189 aa PF10369 ALS_ss_C 200-273 aa PF01842 ACT 356-416 aa PF22629 ACT_AHAS_ss 358-424 aa PF13710 ACT_5 365-426 aa PF10369 ALS_ss_C 437-499 aa

XP_057784496.1

534 aa

267

534

ACT

ACT_AHAS_ss

ACT_5

ALS_ss_C

ACT

ACT_AHAS_ss

ACT_5

ALS_ss_C

XP_057784497.1

525 aa

262

525

ACT

ACT_AHAS_ss

ACT_5

ALS_ss_C

ACT

ACT_AHAS_ss

ACT_5

ALS_ss_C

PF01842 ACT 121-184 aa PF22629 ACT_AHAS_ss 123-188 aa PF13710 ACT_5 131-189 aa PF10369 ALS_ss_C 200-273 aa PF01842 ACT 356-417 aa PF22629 ACT_AHAS_ss 358-424 aa PF13710 ACT_5 365-426 aa PF10369 ALS_ss_C 437-509 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784494.1`	Pfam	`PF01842`	ACT	Domain	121	184	4.7e-21	74.9	ACT domain
`XP_057784494.1`	Pfam	`PF22629`	ACT_AHAS_ss	Domain	123	188	6.6e-41	139.0	AHAS small subunit-like ACT domain
`XP_057784494.1`	Pfam	`PF13710`	ACT_5	Domain	131	189	4.1e-22	78.4	ACT domain
`XP_057784494.1`	Pfam	`PF10369`	ALS_ss_C	Domain	200	282	5.7e-45	151.9	Small subunit of acetolactate synthase
`XP_057784494.1`	Pfam	`PF01842`	ACT	Domain	365	425	4.7e-21	74.9	ACT domain
`XP_057784494.1`	Pfam	`PF22629`	ACT_AHAS_ss	Domain	367	433	6.6e-41	139.0	AHAS small subunit-like ACT domain
`XP_057784494.1`	Pfam	`PF13710`	ACT_5	Domain	374	435	4.1e-22	78.4	ACT domain
`XP_057784494.1`	Pfam	`PF10369`	ALS_ss_C	Domain	446	508	5.7e-45	151.9	Small subunit of acetolactate synthase
`XP_057784495.1`	Pfam	`PF01842`	ACT	Domain	121	184	3.9e-21	75.2	ACT domain
`XP_057784495.1`	Pfam	`PF22629`	ACT_AHAS_ss	Domain	123	188	9.2e-42	141.8	AHAS small subunit-like ACT domain
`XP_057784495.1`	Pfam	`PF13710`	ACT_5	Domain	131	189	1.9e-22	79.5	ACT domain
`XP_057784495.1`	Pfam	`PF10369`	ALS_ss_C	Domain	200	273	2.1e-49	166.2	Small subunit of acetolactate synthase
`XP_057784495.1`	Pfam	`PF01842`	ACT	Domain	356	416	3.9e-21	75.2	ACT domain
`XP_057784495.1`	Pfam	`PF22629`	ACT_AHAS_ss	Domain	358	424	9.2e-42	141.8	AHAS small subunit-like ACT domain
`XP_057784495.1`	Pfam	`PF13710`	ACT_5	Domain	365	426	1.9e-22	79.5	ACT domain
`XP_057784495.1`	Pfam	`PF10369`	ALS_ss_C	Domain	437	499	2.1e-49	166.2	Small subunit of acetolactate synthase
`XP_057784496.1`	Pfam	`PF01842`	ACT	Domain	121	184	4.1e-21	75.1	ACT domain
`XP_057784496.1`	Pfam	`PF22629`	ACT_AHAS_ss	Domain	123	188	5.8e-41	139.2	AHAS small subunit-like ACT domain
`XP_057784496.1`	Pfam	`PF13710`	ACT_5	Domain	131	189	3.5e-22	78.6	ACT domain
`XP_057784496.1`	Pfam	`PF10369`	ALS_ss_C	Domain	200	282	2.5e-51	172.3	Small subunit of acetolactate synthase
`XP_057784496.1`	Pfam	`PF01842`	ACT	Domain	365	425	4.1e-21	75.1	ACT domain
`XP_057784496.1`	Pfam	`PF22629`	ACT_AHAS_ss	Domain	367	433	5.8e-41	139.2	AHAS small subunit-like ACT domain
`XP_057784496.1`	Pfam	`PF13710`	ACT_5	Domain	374	435	3.5e-22	78.6	ACT domain
`XP_057784496.1`	Pfam	`PF10369`	ALS_ss_C	Domain	446	518	2.5e-51	172.3	Small subunit of acetolactate synthase
`XP_057784497.1`	Pfam	`PF01842`	ACT	Domain	121	184	3.4e-21	75.4	ACT domain
`XP_057784497.1`	Pfam	`PF22629`	ACT_AHAS_ss	Domain	123	188	9.2e-42	141.8	AHAS small subunit-like ACT domain
`XP_057784497.1`	Pfam	`PF13710`	ACT_5	Domain	131	189	1.6e-22	79.7	ACT domain
`XP_057784497.1`	Pfam	`PF10369`	ALS_ss_C	Domain	200	273	9.1e-56	186.5	Small subunit of acetolactate synthase
`XP_057784497.1`	Pfam	`PF01842`	ACT	Domain	356	417	3.4e-21	75.4	ACT domain
`XP_057784497.1`	Pfam	`PF22629`	ACT_AHAS_ss	Domain	358	424	9.2e-42	141.8	AHAS small subunit-like ACT domain
`XP_057784497.1`	Pfam	`PF13710`	ACT_5	Domain	365	426	1.6e-22	79.7	ACT domain
`XP_057784497.1`	Pfam	`PF10369`	ALS_ss_C	Domain	437	509	9.1e-56	186.5	Small subunit of acetolactate synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057928511.1
TGAATATTTCATGCTATTATGGGTGATCTTAAATTCTTCTCTGTAAGCCTTAGCCTCCCTGCTTTCACTCTCTCTCCTTTACTGTCAACTGCAGCTGTGAGAGAGAGAGAGAGAGAGGAAACAATGGCGACGAAGGCGGTTTCACGGTGGTCAGTCACCGGCGCGGCGGCGCAGATAGAGCAGCAGCATTTCAGCACCTCAAGCAGTACAGTGCAATTCGGAAGCATTAATTTCAGGCCGCCGAAGCAATTAAGAATAGC...

XM_057928513.1
GAATATTTCATGCTATTATGGGTGATCTTAAATTCTTCTCTGTAAGCCTTAGCCTCCCTGCTTTCACTCTCTCTCCTTTACTGTCAACTGCAGCTGTGAGAGAGAGAGAGAGAGAGGAAACAATGGCGACGAAGGCGGTTTCACGGTGGTCAGTCACCGGCGCGGCGGCGCAGATAGAGCAGCAGCATTTCAGCACCTCAAGCAGTACAGTGCAATTCGGAAGCATTAATTTCAGGCCGCCGAAGCAATTAAGAATAGCC...

CDS

4 records

下载 CDS FASTA

LOC131001882
ATGGGTGATCTTAAATTCTTCTCTGTAAGCCTTAGCCTCCCTGCTTTCACTCTCTCTCCTTTACTGTCAACTGCAGCTGTGAGAGAGAGAGAGAGAGAGGAAACAATGGCGACGAAGGCGGTTTCACGGTGGTCAGTCACCGGCGCGGCGGCGCAGATAGAGCAGCAGCATTTCAGCACCTCAAGCAGTACAGTGCAATTCGGAAGCATTAATTTCAGGCCGCCGAAGCAATTAAGAATAGCCAATGCAGCAGTTAACGC...

Protein

4 records

下载 Protein FASTA

XP_057784494.1
MGDLKFFSVSLSLPAFTLSPLLSTAAVREREREETMATKAVSRWSVTGAAAQIEQQHFSTSSSTVQFGSINFRPPKQLRIANAAVNAGSSDGDAGISFAQNSRPTPPLQQLPGAASRTKRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNEDKALFTIVVSGTEKILQQVVEQLNKLVNVLKVEDLSKEPLVERELMLVKLNADSNTKGEINWLSDIFRGNIVDTSENTLTMEVGILFMVPMVTGDPGKMAAVL...

XP_057784495.1
MGDLKFFSVSLSLPAFTLSPLLSTAAVREREREETMATKAVSRWSVTGAAAQIEQQHFSTSSSTVQFGSINFRPPKQLRIANAAVNAGSSDGDAGISFAQNSRPTPPLQQLPGAASRTKRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNEDKALFTIVVSGTEKILQQVVEQLNKLVNVLKVEDLSKEPLVERELMLVKLNADSNTKGEINWLSDIFRGNIVDTSENTLTMEVTGDPGKMAAVLRNLSKFGIK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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