Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002381`

染色体: Chr08 坐标: 22594732-22597900 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002381`
名称	SmilChr08G002381
描述	uncharacterized SmilChr08G002381
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	22594732 - 22597900 / `+`

ID 对照

NCBI Gene ID	`LOC131001899`
GeneID	`131001899`
locus_tag	`-`
NCBI Name	`LOC131001899`
原始查询	`SmilChr08G002381`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low
产物	Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low
Arabidopsis	`AT5G64950` (AT5G64950) Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619] identity=27.3; qcov=0.914; evalue=1.02e-35; confidence=low
Rice	`Os02g0749800` - identity=27.4; qcov=0.834; evalue=3.23e-33; confidence=low
GO	GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization)
KEGG	-
Pfam	PF02536 (mTERF)
InterPro	-
eggNOG	-
NR	GeneID:131001899

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057784516.1`
2	Nucleus	细胞核	0.00000	`XP_057784516.1`
3	Chromosome	染色体	0.00000	`XP_057784516.1`
4	Centromere	着丝粒	0.00000	`XP_057784516.1`
5	Chromatin	染色质	0.00000	`XP_057784516.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:22595140`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr8:22595509`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C57,C61
`Chr8:22595529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C57,C61
`Chr8:22595587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B57,B61,B90,C36,C57
`Chr8:22595589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B57,B61,B90,C36,C57
`Chr8:22595702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:22595874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:22595910`	`ATC`	`A`	2bp_deletion	frameshift_variant	2	B7,B75
`Chr8:22595910`	`ATC`	`A`	2bp_deletion	CDS_variant	2	B7,B75
`Chr8:22595916`	`AC`	`A`	1bp_deletion	frameshift_variant	3	B64,B7,B75
`Chr8:22595916`	`AC`	`A`	1bp_deletion	CDS_variant	3	B64,B7,B75
`Chr8:22595920`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784516.1

385 aa

192

385

mTERF

PF02536 mTERF 52-229 aa PF02536 mTERF 251-355 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784516.1`	Pfam	`PF02536`	mTERF	Family	52	229	1.4e-29	103.8	mTERF
`XP_057784516.1`	Pfam	`PF02536`	mTERF	Family	251	355	1.4e-29	103.8	mTERF

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009094057.1
TGGACTTATGAATCGAAATCAAGTAAATATTCAAATTATCTTCCTTCATTAGTCATTACTGCGACGGCGGCGACACTGGTGGAGGAAGAATCCCTCAATCGAGAAACTTTGAGTCCTTGGATATTACTGCGACGGCGGCGACACTGGTGGAGGAAGAATCCCTCAATCGAGAAACTTTGAGTCCTTGGATTTCGCAAGTCATTTCCATCTCCCACCACAATTTATTCTTCTCGGGTATTAGCCATTATGATTGCAATTGC...

XR_009094056.1
GACTTATGAATCGAAATCAAGTAAATATTCAAATTATCTTCCTTCATTAGTCATTACTGCGACGGCGGCGACACTGGTGGAGGAAGAATCCCTCAATCGAGAAACTTTGAGTCCTTGGATATTACTGCGACGGCGGCGACACTGGTGGAGGAAGAATCCCTCAATCGAGAAACTTTGAGTCCTTGGATTTCGCAAGTCATTTCCATCTCCCACCACAATTTATTCTTCTCGGGTATTAGCCATTATGATTGCAATTGCAC...

CDS

1 records

下载 CDS FASTA

LOC131001899
ATGATTGCAATTGCACGCAGGAATCTCTCTTGTTTATTTTTTAGCCCTAATTCATTTCTCTGTAACCCCAATGTTCTCTCAGTCCACTTTTTTTCGACTGCGAGTGTCATAAGATCAATCCCTAGCCCTGAAATTTACCATGTGTTGTTCCATAAACACAACCTTTCTCCTAAATCGTCTTCACTAGCTGCATCGTGTTTACCTAAATTTCAAGGCCCCGAAAGAGCTGATTCAATGCTATCATTCCTCAAAGAGAATAG...

Protein

1 records

下载 Protein FASTA

XP_057784516.1
MIAIARRNLSCLFFSPNSFLCNPNVLSVHFFSTASVIRSIPSPEIYHVLFHKHNLSPKSSSLAASCLPKFQGPERADSMLSFLKENSFTSNQLEKIVMYKPQILGFPIERLKSIFKVFQDLGLSSEEIAKMMSSDKRILLSSKVKVNHIISSLSILKVLLGSNEEVARLLKRCSWFVRSDLEKILMPNVEILKSCGIPMERILHFLYTQPRCFFSKPDIVRKSVDRAIKFGVPQTSIVFIQAIGVFSCMSEGLWEVKLKT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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