Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002385`

染色体: Chr08 坐标: 22609635-22613218 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002385`
名称	SmilChr08G002385
描述	receptor-like protein 7
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	22609635 - 22613218 / `+`

ID 对照

NCBI Gene ID	`LOC131001903`
GeneID	`131001903`
locus_tag	`-`
NCBI Name	`LOC131001903`
原始查询	`SmilChr08G002385`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 7
产物	receptor-like protein 7
Arabidopsis	`AT1G47890` (RLP7) receptor like protein 7 [Source:NCBI gene (formerly Entrezgene);Acc:841206] identity=35.7; qcov=1.03; evalue=1.97e-150; confidence=medium
Rice	`Os04g0480500` - identity=35.9; qcov=1.06; evalue=9.02e-179; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131001903

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057784520.1`
2	Nucleus	细胞核	0.00000	`XP_057784520.1`
3	Chromosome	染色体	0.00000	`XP_057784520.1`
4	Centromere	着丝粒	0.00000	`XP_057784520.1`
5	Chromatin	染色质	0.00000	`XP_057784520.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:22609953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B100,B91
`Chr8:22610072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr8:22610087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B24,B78,C21,C44
`Chr8:22610136`	`GC`	`G`	1bp_deletion	frameshift_variant	1	D11
`Chr8:22610136`	`GC`	`G`	1bp_deletion	CDS_variant	1	D11
`Chr8:22610164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B44
`Chr8:22610228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B24,B78,C21,C44
`Chr8:22610291`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B44
`Chr8:22610377`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr8:22610659`	`A`	`AT`	1bp_insertion	frameshift_variant	25	A18,A8,B108,B113,B136,B140,B33,B38,B39,B49,B66,B69,B7,B79,B88,B98,C12,C24,C32,C33,C49,C55,C68,C79,C82
`Chr8:22610781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C82
`Chr8:22610847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784520.1

1071 aa

536

1071

LRRNT_2

LRR_1

LRR_8

LRR_4

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 58-83 aa PF00560 LRR_1 110-133 aa PF00560 LRR_1 135-157 aa PF00560 LRR_1 237-259 aa PF00560 LRR_1 359-379 aa PF00560 LRR_1 455-474 aa PF00560 LRR_1 551-570 aa PF00560 LRR_1 627-647 aa PF00560 LRR_1 674-695 aa PF00560 LRR_1 698-718 aa PF00560 LRR_1 745-767 aa PF13855 LRR_8 745-804 aa PF12799 LRR_4 769-808 aa PF00560 LRR_1 770-791 aa PF13855 LRR_8 770-830 aa PF00560 LRR_1 889-908 aa PF00560 LRR_1 910-932 aa PF00560 LRR_1 935-956 aa PF00560 LRR_1 959-975 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784520.1`	Pfam	`PF08263`	LRRNT_2	Family	58	83	0.00018	22.4	Leucine rich repeat N-terminal domain
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	110	133	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	135	157	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	237	259	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	359	379	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	455	474	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	551	570	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	627	647	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	674	695	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	698	718	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	745	767	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF13855`	LRR_8	Repeat	745	804	1.3e-62	208.1	Leucine rich repeat
`XP_057784520.1`	Pfam	`PF12799`	LRR_4	Repeat	769	808	3.3e-56	186.7	Leucine Rich repeats (2 copies)
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	770	791	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF13855`	LRR_8	Repeat	770	830	1.3e-62	208.1	Leucine rich repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	889	908	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	910	932	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	935	956	4.3e-61	190.3	Leucine Rich Repeat
`XP_057784520.1`	Pfam	`PF00560`	LRR_1	Repeat	959	975	4.3e-61	190.3	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057928537.1
TGATAAAATTTTGAAATTTATTCTTTCTCCTTTTTTTCGCATGATAAATTTATATAACTAAAGAAAATAAATGTCGGTAAGAAAAGAAAAGGAACAATAACTAACTTAAGTCTTTGCAATTTAGTGATCTGCATTCTATAAATATGTAGCTAAGGTTCCAACCACAAAGCATGCACAAAATAGCGGGAAACAATGAGTCTGGGCTGTAAGAAGAATTCTTTGCTCTTTCTCATCTTTTTAGCCTTTGCCTCACAATACTC...

CDS

1 records

下载 CDS FASTA

LOC131001903
ATGAGTCTGGGCTGTAAGAAGAATTCTTTGCTCTTTCTCATCTTTTTAGCCTTTGCCTCACAATACTCACATTCAGCACAGCTGCCACACCGGTGCCTCGACAACCAGAAAGCAACATTGCTGCAGCTGCAGAAGGATGTCCTCAGCCACAACTCATCCACTGTCACGTTCGATGATAACTCTTCAATGGTGGTGGCAAAATGGGACAACAAAACGGATTGCTGCTCGTGGGATGGTGTGACATGCGACCATTCTGGCAA...

Protein

1 records

下载 Protein FASTA

XP_057784520.1
MSLGCKKNSLLFLIFLAFASQYSHSAQLPHRCLDNQKATLLQLQKDVLSHNSSTVTFDDNSSMVVAKWDNKTDCCSWDGVTCDHSGNVVGLNLSYSSLSGHIDAIINLRHLQRLNLAGNNFQLTPIPSGFERLSNLTHLNLSFSCFSDQIPAGISSLVRLESLDLSTIFFCELPPTFNDPDFNRPFAFEERHRLRLERPNLESFVRNLRALTELNLDYVDLSAQGSSWSQALSVLPNLKFLSLSNCKLSGPIHTSFQNLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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