当前解析结果
SmilChr08G002389| 统一新 Gene ID | SmilChr08G002389 |
|---|---|
| 名称 | SmilChr08G002389 |
| 描述 | nuclear transcription factor Y subunit B-8-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 22652611 - 22657883 / + |
| NCBI Gene ID | LOC131001908 |
|---|---|
| GeneID | 131001908 |
| locus_tag | - |
| NCBI Name | LOC131001908 |
| 原始查询 | SmilChr08G002389 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nuclear transcription factor Y subunit B-8-like |
| 产物 | nuclear transcription factor Y subunit B-8-like |
| Arabidopsis | AT2G37060 (NF-YB8)nuclear factor Y, subunit B8 [Source:NCBI gene (formerly Entrezgene);Acc:818282] identity=80; qcov=1; evalue=1.18e-64; confidence=high |
| Rice | Os01g0834400 (HAP3A)- identity=77.2; qcov=0.991; evalue=3.63e-60; confidence=high |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016602 (CCAAT-binding factor complex); GO:0046982 (protein heterodimerization activity) |
| KEGG | - |
| Pfam | PF00808 (CBFD_NFYB_HMF) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001908 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057784527.1 |
| 2 | Chromosome | 染色体 | 0.60000 | XP_057784532.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057784527.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057784527.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057784527.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:22653251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr8:22656005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,C82 |
Chr8:22656308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr8:22656351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B96 |
Chr8:22656442 |
AGT |
A |
2bp_deletion | frameshift_variant | 1 | B46 |
Chr8:22656442 |
AGT |
A |
2bp_deletion | CDS_variant | 1 | B46 |
Chr8:22656454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,B49,B53,B64,C40 |
Chr8:22656532 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C47 |
Chr8:22656532 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057784527.1PF00808
CBFD_NFYB_HMF 29-93 aa
XP_057784528.1PF00808
CBFD_NFYB_HMF 29-93 aa
XP_057784530.1PF00808
CBFD_NFYB_HMF 29-93 aa
XP_057784531.1PF00808
CBFD_NFYB_HMF 29-93 aa
XP_057784532.1PF00808
CBFD_NFYB_HMF 29-93 aa
XP_057784533.1PF00808
CBFD_NFYB_HMF 29-93 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057784527.1 |
Pfam | PF00808 |
CBFD_NFYB_HMF | Domain | 29 | 93 | 1.9e-28 | 99.2 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
XP_057784528.1 |
Pfam | PF00808 |
CBFD_NFYB_HMF | Domain | 29 | 93 | 1.9e-28 | 99.2 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
XP_057784530.1 |
Pfam | PF00808 |
CBFD_NFYB_HMF | Domain | 29 | 93 | 1.4e-28 | 99.7 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
XP_057784531.1 |
Pfam | PF00808 |
CBFD_NFYB_HMF | Domain | 29 | 93 | 1.1e-28 | 100.0 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
XP_057784532.1 |
Pfam | PF00808 |
CBFD_NFYB_HMF | Domain | 29 | 93 | 8.9e-29 | 100.3 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
XP_057784533.1 |
Pfam | PF00808 |
CBFD_NFYB_HMF | Domain | 29 | 93 | 8.5e-29 | 100.3 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。