当前解析结果
SmilChr08G002395| 统一新 Gene ID | SmilChr08G002395 |
|---|---|
| 名称 | SmilChr08G002395 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 22730477 - 22732770 / + |
| NCBI Gene ID | LOC130998203 |
|---|---|
| GeneID | 130998203 |
| locus_tag | - |
| NCBI Name | LOC130998203 |
| 原始查询 | SmilChr08G002395 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=31; qcov=0.794; evalue=3.93e-82; confidence=low |
| Rice | Os11g0681300- identity=26.5; qcov=0.961; evalue=2.52e-67; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998203 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779616.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057779616.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779616.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779616.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779616.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:22730529 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr8:22730539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,C8 |
Chr8:22730566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,B67 |
Chr8:22730617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B137,B20,B86,C86 |
Chr8:22730622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B138,B58,C87 |
Chr8:22730626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C63,C8 |
Chr8:22730647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B44,C24,C60 |
Chr8:22730654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr8:22730661 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B110,B58,C66,C84,C87 |
Chr8:22730663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr8:22730667 |
AAC |
A |
2bp_deletion | frameshift_variant | 2 | B12,C87 |
Chr8:22730667 |
AAC |
A |
2bp_deletion | CDS_variant | 2 | B12,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779616.1PF03101
FAR1 5-70 aa
PF21056
ZSWIM1-3_RNaseH-like 161-272 aa
PF10551
MULE 192-284 aa
PF04434
SWIM 485-506 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779616.1 |
Pfam | PF03101 |
FAR1 | Domain | 5 | 70 | 1.4e-08 | 36.0 | FAR1 DNA-binding domain |
XP_057779616.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 161 | 272 | 1e-08 | 35.9 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057779616.1 |
Pfam | PF10551 |
MULE | Domain | 192 | 284 | 9.4e-27 | 94.0 | MULE transposase domain |
XP_057779616.1 |
Pfam | PF04434 |
SWIM | Domain | 485 | 506 | 0.0004 | 20.6 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。