Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002399

染色体: Chr08 坐标: 22770141-22772985 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002399
名称SmilChr08G002399
描述protein IQ-DOMAIN 3-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向22770141 - 22772985 / -

ID 对照

NCBI Gene IDLOC131001918
GeneID131001918
locus_tag-
NCBI NameLOC131001918
原始查询SmilChr08G002399

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein IQ-DOMAIN 3-like
产物protein IQ-DOMAIN 3-like
ArabidopsisAT5G03040 (iqd2)
IQ-domain 2 [Source:NCBI gene (formerly Entrezgene);Acc:831696]
identity=44.4; qcov=1.05; evalue=6.07e-102; confidence=medium
RiceOs05g0123200
-
identity=43.7; qcov=1.08; evalue=1.18e-93; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF00612 (IQ)
InterPro-
eggNOG-
NRGeneID:131001918

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057784546.1
2 Cell membrane 细胞膜 0.80000 XP_057784546.1
3 Nucleus 细胞核 0.60000 XP_057784546.1
4 Cytosol 细胞质基质 0.40000 XP_057784546.1
5 Nucleus membrane 核膜 0.20000 XP_057784546.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:22770467 G A EMS_canonical_SNV CDS_variant 1 B13
Chr8:22770474 C T EMS_canonical_SNV CDS_variant 2 B127,C17
Chr8:22770577 C T EMS_canonical_SNV CDS_variant 1 A15
Chr8:22770619 C T EMS_canonical_SNV CDS_variant 5 B46,C76,D10,D2,D8
Chr8:22770641 C T EMS_canonical_SNV CDS_variant 1 B24
Chr8:22770726 G A EMS_canonical_SNV CDS_variant 2 B66,B8
Chr8:22770751 G A EMS_canonical_SNV CDS_variant 2 B66,B8
Chr8:22770764 G A EMS_canonical_SNV CDS_variant 3 B26,C77,D6
Chr8:22770836 C T EMS_canonical_SNV CDS_variant 2 A4,B104
Chr8:22770943 G A EMS_canonical_SNV CDS_variant 4 A5,A7,B7,B80
Chr8:22770958 G A EMS_canonical_SNV CDS_variant 2 A4,B104
Chr8:22771133 C T EMS_canonical_SNV CDS_variant 5 B1,B108,B12,B46,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057784546.1
444 aa
N
1
222
444
IQ
C
PF00612 IQ 120-137 aa
XP_057784547.1
444 aa
N
1
222
444
IQ
C
PF00612 IQ 120-137 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057784546.1 Pfam PF00612 IQ Motif 120 137 0.00011 22.3 IQ calmodulin-binding motif
XP_057784547.1 Pfam PF00612 IQ Motif 120 137 0.00011 22.3 IQ calmodulin-binding motif

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057928564.1
ACTATGGACCAATGCAACTGTTTGGAATGCTCTCTCTCTCTCTCTGGTCAGAAACAATTTTGAAAAACACCAAAATCCGACATAAGTAGTTTGTCTGGTCTTAAAACAAGAACAAGAGTGGATGCTCTCTCTCTCTCTCTGGTCAGAATCATTAGTGGGCCGCACAACTCCCATCTCCATTTCTAGTCCCCCCACCCATTACCTGCAGTGCAGGCCGTGTGGTGACCAAAATCCCCAGATTGCCCCTCTTCGTTATTCTT...
XM_057928563.1
ACTATGGACCAATGCAACTGTTTGGAATGCTCTCTCTCTCTCTCTGGTCAGAAACAATTTTGAAAAACACCAAAATCCGACATAAGTAGTTTGTCTGGTCTTAAAACAAGAACAAGAGTGGATGCTCTCTCTCTCTCTCTGGTCAGAATCATTAGTGGGCCGCACAACTCCCATCTCCATTTCTAGTCCCCCCACCCATTACCTGCAGTGCAGGCCGTGTGGTGACCAAAATCCCCAGATTGCCCCTCTTCGTTATTCTT...

CDS

2 records

下载 CDS FASTA
LOC131001918
ATGGGGAAGAGAAGGTCCTTGTTTTCTGCATTGAAGAAAGCTCTCGCTTGTGAATCCAAACAAAATCAAGGAAAGAGCACTAGGAAAAAAAGAGGATGTTTCCGGAGGCAACAGAGCGTAAATCAGGAGGCGTCCAGCGCAGAGAAGGCCATAGTCCTTCAAGCAAGTCCACCTCCAACTCCAAGGGAGGAGGTGAAGTTGCTCGAAGCAGAGAGCGAACAGAATAGGCACGCCTATTCTGTTGCTCTCGTGACTGCCAT...
LOC131001918
ATGGGGAAGAGAAGGTCCTTGTTTTCTGCATTGAAGAAAGCTCTCGCTTGTGAATCCAAACAAAATCAAGGAAAGAGCACTAGGAAAAAAAGAGGATGTTTCCGGAGGCAACAGAGCGTAAATCAGGAGGCGTCCAGCGCAGAGAAGGCCATAGTCCTTCAAGCAAGTCCACCTCCAACTCCAAGGGAGGAGGTGAAGTTGCTCGAAGCAGAGAGCGAACAGAATAGGCACGCCTATTCTGTTGCTCTCGTGACTGCCAT...

Protein

2 records

下载 Protein FASTA
XP_057784546.1
MGKRRSLFSALKKALACESKQNQGKSTRKKRGCFRRQQSVNQEASSAEKAIVLQASPPPTPREEVKLLEAESEQNRHAYSVALVTAMAAEAAVAAANAAAEVVRLRAAAYSSGKTKEEIASIKIQAAFRGYMARRVLRALRGLVRLKSVVGGKSVERQAAASLKCMQTMARLQSEIRARRIRLLEENPSVLKQRPNDDLEKSRALKGDNWDQSSRSKEQIEADKHYRKEAAMRRERALAYAYSHQTFRNPSDSTNEMLVD...
XP_057784547.1
MGKRRSLFSALKKALACESKQNQGKSTRKKRGCFRRQQSVNQEASSAEKAIVLQASPPPTPREEVKLLEAESEQNRHAYSVALVTAMAAEAAVAAANAAAEVVRLRAAAYSSGKTKEEIASIKIQAAFRGYMARRVLRALRGLVRLKSVVGGKSVERQAAASLKCMQTMARLQSEIRARRIRLLEENPSVLKQRPNDDLEKSRALKGDNWDQSSRSKEQIEADKHYRKEAAMRRERALAYAYSHQTFRNPSDSTNEMLVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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