Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002404`

染色体: Chr08 坐标: 22831969-22836883 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002404`
名称	SmilChr08G002404
描述	uncharacterized SmilChr08G002404
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	22831969 - 22836883 / `+`

ID 对照

NCBI Gene ID	`LOC131001923`
GeneID	`131001923`
locus_tag	`-`
NCBI Name	`LOC131001923`
原始查询	`SmilChr08G002404`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Enhancer of polycomb-like transcription factor protein [Source:NCBI gene (formerly Entrezgene);Acc:830344]; symbol=AT5G04670; hit=AT5G04670; species=arabidopsis; confidence=medium
产物	Enhancer of polycomb-like transcription factor protein [Source:NCBI gene (formerly Entrezgene);Acc:830344]; symbol=AT5G04670; hit=AT5G04670; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G04670` (AT5G04670) Enhancer of polycomb-like transcription factor protein [Source:NCBI gene (formerly Entrezgene);Acc:830344] identity=45.7; qcov=0.473; evalue=3.36e-94; confidence=medium
Rice	`Os02g0100200` - identity=40.7; qcov=0.463; evalue=2.64e-64; confidence=medium
GO	GO:0006357 (regulation of transcription by RNA polymerase II); GO:0032777 (piccolo histone acetyltransferase complex)
KEGG	-
Pfam	PF10513 (EPL1)
InterPro	-
eggNOG	-
NR	GeneID:131001923

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784555.1`
2	Chromosome	染色体	0.00000	`XP_057784555.1`
3	Centromere	着丝粒	0.00000	`XP_057784555.1`
4	Chromatin	染色质	0.00000	`XP_057784555.1`
5	Telomere	端粒	0.00000	`XP_057784555.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:22833206`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C16,C63,C67
`Chr8:22833281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B100,B91
`Chr8:22833473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B24,B44,B60
`Chr8:22833492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,B64
`Chr8:22833517`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B70,C62
`Chr8:22833874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr8:22833904`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,B46,D3
`Chr8:22834115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:22834391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,B133
`Chr8:22834447`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B46,D3
`Chr8:22834628`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B118,B24,B44,B60
`Chr8:22834757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784555.1

791 aa

396

791

EPL1

PF10513 EPL1 528-624 aa

XP_057784556.1

791 aa

396

791

EPL1

PF10513 EPL1 528-624 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784555.1`	Pfam	`PF10513`	EPL1	Family	528	624	1.1e-11	46.4	Enhancer of polycomb-like
`XP_057784556.1`	Pfam	`PF10513`	EPL1	Family	528	624	1.1e-11	46.4	Enhancer of polycomb-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928573.1
TCTCTCACACACACAGAGAAAAAGTCATGGGCCCCTCACCTCCTCGAACTATTCCCCAAAGTCATCAAATCCCTCGAATCTCAGCGGTCCATCGCTTTGATCCAACGGTCCCATTTACTCGTGGTCAGTAGCAGCAGCAGTTATTAGTCACCCTCCTCTTTCGCTCCCTTCTCATAAACCCTAGAATCTGCAATCTAGACCCCGCAGCCACCGTTTCTACGTGAATAGTTTTAAATCAGACGGGAATTCGTCATAAAATT...

XM_057928572.1
CTCTCACACACACAGAGAAAAAGTCATGGGCCCCTCACCTCCTCGAACTATTCCCCAAAGTCATCAAATCCCTCGAATCTCAGCGGTCCATCGCTTTGATCCAACGGTCCCATTTACTCGTGGTCAGTAGCAGCAGCAGTTATTAGTCACCCTCCTCTTTCGCTCCCTTCTCATAAACCCTAGAATCTGCAATCTAGACCCCGCAGCCACCGTTTCTACGTGAATAGTTTTAAATCAGACGGGAATTCGTCATAAAATTA...

CDS

2 records

下载 CDS FASTA

LOC131001923
ATGCCTTCAGTGGGAATGAGAAGAAGTACAAGGGTGTTTGGGACACGAGTTTTGCGTTCAGGGAGGAAGCTGTGGACGGAACCTCAAGAGGGCGGCAAAAACGTGAGAGCAACTTATGGTGAAAATAAGTTCCAGGAACTTCTTGACAATACTGCTGATGGAGGTGGGGACATTGATGGCCGTCGCAGGAAACTGTGGCAGGAAGATGAAACGAGCGCTTCACTTGATATGAGTGCAGAACCTAAAATGGAAGAGCGTGA...

Protein

2 records

下载 Protein FASTA

XP_057784555.1
MPSVGMRRSTRVFGTRVLRSGRKLWTEPQEGGKNVRATYGENKFQELLDNTADGGGDIDGRRRKLWQEDETSASLDMSAEPKMEERETGGVEEKNVDRRCGIVYKRKRKRAELTAADLVEDGRFAKKYVRKQWRKRCRASESFGACGGIRDSVRTRELAIVVNESSYDCYYWITCFLTSLLSYMARARIGMRQLSAFMLSKPMSDAYSSCGMLFLQDPITAVKPCVCIVTGSRSTMPLFSVNIFAIPPFFVHIQTSVFLR...

XP_057784556.1
MPSVGMRRSTRVFGTRVLRSGRKLWTEPQEGGKNVRATYGENKFQELLDNTADGGGDIDGRRRKLWQEDETSASLDMSAEPKMEERETGGVEEKNVDRRCGIVYKRKRKRAELTAADLVEDGRFAKKYVRKQWRKRCRASESFGACGGIRDSVRTRELAIVVNESSYDCYYWITCFLTSLLSYMARARIGMRQLSAFMLSKPMSDAYSSCGMLFLQDPITAVKPCVCIVTGSRSTMPLFSVNIFAIPPFFVHIQTSVFLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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