Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002419`

染色体: Chr08 坐标: 22983495-22991590 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002419`
名称	SmilChr08G002419
描述	uncharacterized SmilChr08G002419
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	22983495 - 22991590 / `-`

ID 对照

NCBI Gene ID	`LOC131001938`
GeneID	`131001938`
locus_tag	`-`
NCBI Name	`LOC131001938`
原始查询	`SmilChr08G002419`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824668]; symbol=AT3G55020; hit=AT3G55020; species=arabidopsis; confidence=high
产物	Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824668]; symbol=AT3G55020; hit=AT3G55020; species=arabidopsis; confidence=high
Arabidopsis	`AT3G55020` (AT3G55020) Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824668] identity=66; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0835000` - identity=61.6; qcov=1; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00566 (RabGAP-TBC); PF23436 (RabGap-TBC_2)
InterPro	-
eggNOG	-
NR	GeneID:131001938

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057784567.1`
2	Trans-golgi network	Trans-golgi network	0.80000	`XP_057784567.1`
3	Cytosol	细胞质基质	0.20000	`XP_057784567.1`
4	Nucleus	细胞核	0.00000	`XP_057784567.1`
5	Chromosome	染色体	0.00000	`XP_057784567.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:22984290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B100,B122,B91
`Chr8:22984621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,B84,C59,C81
`Chr8:22986214`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr8:22987451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:22987605`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr8:22988047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C76,D8
`Chr8:22988384`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr8:22988417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:22988831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:22988841`	`CTG`	`C`	2bp_deletion	frameshift_variant	1	B44
`Chr8:22988841`	`CTG`	`C`	2bp_deletion	CDS_variant	1	B44
`Chr8:22989065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784567.1

798 aa

399

798

RabGAP-TBC

RabGap-TBC_2

PF00566 RabGAP-TBC 232-452 aa PF23436 RabGap-TBC_2 313-471 aa

XP_057784569.1

798 aa

399

798

RabGAP-TBC

RabGap-TBC_2

PF00566 RabGAP-TBC 232-452 aa PF23436 RabGap-TBC_2 313-471 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784567.1`	Pfam	`PF00566`	RabGAP-TBC	Family	232	452	2.2e-55	188.4	Rab-GTPase-TBC domain
`XP_057784567.1`	Pfam	`PF23436`	RabGap-TBC_2	Domain	313	471	4.7e-27	95.8	RabGAP TBC domain
`XP_057784569.1`	Pfam	`PF00566`	RabGAP-TBC	Family	232	452	2.2e-55	188.4	Rab-GTPase-TBC domain
`XP_057784569.1`	Pfam	`PF23436`	RabGap-TBC_2	Domain	313	471	4.7e-27	95.8	RabGAP TBC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928586.1
TGCAGGGTAGATTAATAAGTTTAAACATTTGAAGCGAAAGGGGACTATATCACACCAACAGTGTGGCGCTTCCATTTTACAGTTTGAAACAATGAACATTCTGAAATTGAGATCTCTGATTCCATTTCTCCCTGCAAATTCACTCTTCCTCTTCTGCTAGCACACCTCTCGCGCGAAATTCATGCTAAAGCAATCGCCATTTTATTCTCGTGCGACGCAATTATTGATTAGATAGATCGAACCCATCAAAATAGCGACGC...

XM_057928584.1
GCGAAAGGGGACTATATCACACCAACAGTGTGGCGCTTCCATTTTACAGTTTGAAACAATGAACATTCTGAAATTGAGATCTCTGATTCCATTTCTCCCTGCAAATTCACTCTTCCTCTTCTGCTAGCACACCTCTCGCGCGAAATTCATGCTAAAGCAATCGCCATTTTATTCTCGTGCGACGGTAATCTCGCGCTTTTCCATGTGATGATTATGGACCCCACGAACCCATCATGCCATCATTAATCCCCACGAACTTT...

CDS

2 records

下载 CDS FASTA

LOC131001938
ATGAAGGCCAAAGGCGTGGCGGCGGCGGCGCTGAACCCTGTTCCTGTGGTTTCTCTTGAGCACAAGAGGGATGCTTATGGGTTTGCAGTGAGACCTCAGCACTTGCAAAGATATCGGGAATATGCTAATATCTACAAGGAAGAAGAGGAGGAGAGGTCAGATAGGTGGAAGGACTTTTTGGAAAGACAATCAGGGTCTGCTCAGTTGCCTGTTGGGTCAGTTGAAACTGATGACACCGTAAGGCTGAACAATGGATCGGC...

Protein

2 records

下载 Protein FASTA

XP_057784567.1
MKAKGVAAAALNPVPVVSLEHKRDAYGFAVRPQHLQRYREYANIYKEEEEERSDRWKDFLERQSGSAQLPVGSVETDDTVRLNNGSADLNADDSQNNVADSDGNKTKPNNSNEANAALPSEKDGKVHRVQTWTEIRSSLCAIEDLMSSRVKKKVSLNRSEPDIAAKKPLHSIDETRPGKGACEEDSEEEFYDVERSESDSIQEIPGHAAHSESLPPWKEELECLVQGGVPMALRGEMWQAFVGVRARRVENYYQNLLASD...

XP_057784569.1
MKAKGVAAAALNPVPVVSLEHKRDAYGFAVRPQHLQRYREYANIYKEEEEERSDRWKDFLERQSGSAQLPVGSVETDDTVRLNNGSADLNADDSQNNVADSDGNKTKPNNSNEANAALPSEKDGKVHRVQTWTEIRSSLCAIEDLMSSRVKKKVSLNRSEPDIAAKKPLHSIDETRPGKGACEEDSEEEFYDVERSESDSIQEIPGHAAHSESLPPWKEELECLVQGGVPMALRGEMWQAFVGVRARRVENYYQNLLASD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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